RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 FAM89BQ8N5H3 189 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 OR5A2Q8NGI9 324 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 H1FXQ92522 213 aaKnown RBP12.7□□□□□ -0.38
CUX1-215ENST00000556210 MOB3AQ96BX8 217 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 DLL3Q9NYJ7 618 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 ST8SIA5O15466 376 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 DFFBO76075 338 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 GNG10P50151 68 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 OR4F5Q8NH21 305 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 OR4A16Q8NH70 328 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 OR4F4Q96R69 305 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 OR2W1Q9Y3N9 320 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 IRF2P14316 349 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 MPZP25189 248 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 ZNF718Q3SXZ3 478 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 NTNG2Q96CW9 530 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 CLN8Q9UBY8 286 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 NTN3O00634 580 aaPredicted RBP12.69□□□□□ -0.38
CUX1-215ENST00000556210 KLK10O43240 276 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 OR2H2O95918 312 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 CD200P41217 278 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 GPR12P47775 334 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 RIPPLY2Q5TAB7 128 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 OR1L1Q8NH94 360 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 LRRC29Q8WV35 223 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 LEAP2Q969E1 77 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 GPR87Q9BY21 358 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 TMEM222Q9H0R3 208 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 ZNF71Q9NQZ8 489 aaPredicted RBP12.69□□□□□ -0.38
CUX1-215ENST00000556210 LAMP3Q9UQV4 416 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 BTBD17A6NE02 478 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 M0R1X1 148 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 CRYAAP02489 173 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 HLA-DRB3P79483 266 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 WFDC8Q8IUA0 241 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 GUCD1Q96NT3 240 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 DCTN5Q9BTE1 182 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 CRIM1Q9NZV1 1036 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 TGIF2-C20orf24A0A0A6YYL0 155 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 DNPH1O43598 174 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 SYNGR2O43760 224 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 NDUFS6O75380 124 aaKnown RBP12.69□□□□□ -0.38
CUX1-215ENST00000556210 SCGB1D1O95968 90 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 CRYGSP22914 178 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 TM2D1Q9BX74 207 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 PROCRQ9UNN8 238 aa12.69□□□□□ -0.38
CUX1-215ENST00000556210 PPP5D1E7EU14 171 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 CLDN34H7C241 214 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 SP9P0CG40 484 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 F2RP25116 425 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 SMIM7Q9BQ49 75 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 TMEM204Q9BSN7 226 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 TIMM8BQ9Y5J9 83 aaPredicted RBP12.68□□□□□ -0.38
CUX1-215ENST00000556210 H7BYZ3 331 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 PGLYRP1O75594 196 aaPredicted RBP12.68□□□□□ -0.38
CUX1-215ENST00000556210 CCL1P22362 96 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 RAB4BP61018 213 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 RND3P61587 244 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 BATFQ16520 125 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 FDCSPQ8NFU4 85 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 CA5BP1Q8WTZ4 195 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 SARAFQ96BY9 339 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 LIN7CQ9NUP9 197 aaKnown RBP12.68□□□□□ -0.38
CUX1-215ENST00000556210 INTS1Q8N201 2190 aaKnown RBP12.68□□□□□ -0.38
CUX1-215ENST00000556210 A0A1W2PPQ1 181 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 IGSF23A1L1A6 192 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 AQP7O14520 342 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 OR8U8P0C7N1 319 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 MMP9P14780 707 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 CDX1P47902 265 aaPredicted RBP12.68□□□□□ -0.38
CUX1-215ENST00000556210 RPS23P62266 143 aaKnown RBP12.68□□□□□ -0.38
CUX1-215ENST00000556210 SCCPDHQ8NBX0 429 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 OR10P1Q8NGE3 313 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 PPP1R35Q8TAP8 253 aa12.68□□□□□ -0.38
CUX1-215ENST00000556210 NUDT16L1Q9BRJ7 211 aaKnown RBP12.68□□□□□ -0.38
CUX1-215ENST00000556210 OPN3Q9H1Y3 402 aaPredicted RBP12.68□□□□□ -0.38
CUX1-215ENST00000556210 OR5B21A6NL26 309 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 HAND1O96004 215 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 HIST3H3Q16695 136 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 GPR146Q96CH1 333 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 HSF4Q9ULV5 492 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 DMRT1Q9Y5R6 373 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 MPC1Q9Y5U8 109 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 ZGRF1Q86YA3 2104 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 OTOGLQ3ZCN5 2332 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 ATRXP46100 2492 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 CXorf65A6NEN9 183 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 LHX2P50458 406 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 ZADH2Q8N4Q0 377 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 TMEM37Q8WXS4 190 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 MALSU1Q96EH3 234 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 ZNF665Q9H7R5 613 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 Q9N2K0 584 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 FGF7P21781 194 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 FAM201AQ5SY85 155 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 LHFPL1Q86WI0 220 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 PACRGQ96M98 296 aaPredicted RBP12.67□□□□□ -0.38
CUX1-215ENST00000556210 TECTBQ96PL2 329 aa12.67□□□□□ -0.38
CUX1-215ENST00000556210 RIMS4Q9H426 269 aaPredicted RBP12.67□□□□□ -0.38
CUX1-215ENST00000556210 ATP23Q9Y6H3 246 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms