RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 IL13RA1P78552 427 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 HLA-DRB3P79483 266 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 CD83Q01151 205 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 PDCD1Q15116 288 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 MPPED2Q15777 294 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 TMEM128Q5BJH2 165 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 DHRS11Q6UWP2 260 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 RBMS3Q6XE24 437 aaKnown RBP5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 ZNF826PQ6ZT77 177 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 SLC36A1Q7Z2H8 476 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 LYG2Q86SG7 212 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 LHFPL1Q86WI0 220 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 SGPP2Q8IWX5 399 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 C11orf53Q8IXP5 236 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 SLC38A6Q8IZM9 456 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 TCTE3Q8IZS6 198 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 FAM185AQ8N0U4 392 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 C12orf45Q8N5I9 185 aaPredicted RBP5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 SPICQ8N5J4 248 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 BOLLQ8N9W6 283 aaKnown RBP5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 UXS1Q8NBZ7 420 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 TMEM185AQ8NFB2 350 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 OR5T2Q8NGG2 359 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 OR13C8Q8NGS7 320 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 OR10J5Q8NHC4 309 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 CLDND2Q8NHS1 167 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 Q8TCH9 128 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 ZNF486Q96H40 463 aaPredicted RBP5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 ZNF2Q9BSG1 426 aaPredicted RBP5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 HDHD3Q9BSH5 251 aaPredicted RBP5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 DNTTIP1Q9H147 329 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 WDR13Q9H1Z4 485 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 ZNF665Q9H7R5 613 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 BEX1Q9HBH7 125 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 MGAT4CQ9UBM8 478 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 OPN4Q9UHM6 478 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 GPR132Q9UNW8 380 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 BIRC6Q9NR09 4857 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 A0A0B4J2A0 478 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 IGHV3-64DA0A0J9YX35 117 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 TEX13DA0A0J9YY54 714 aaPredicted RBP5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 DNAJC9-AS1A6NH13 148 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 OR2AT4A6NND4 320 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 CEACAM18A8MTB9 384 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 SDCBPO00560 298 aaPredicted RBP5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 MGST3O14880 152 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 NDUFA2O43678 99 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 HLA-AP01891 365 aaKnown RBP5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 CTSDP07339 412 aaPredicted RBP5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 GIPP09681 153 aaPredicted RBP5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 SULT1A3P0DMM9 295 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 SULT1A4P0DMN0 295 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 AKR1C4P17516 323 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 GZMHP20718 246 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 VAMP1P23763 118 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 FCGR2CP31995 323 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 GPR6P46095 362 aaPredicted RBP5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 NPY4RP50391 375 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 RAP2BP61225 183 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 COL10A1Q03692 680 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 FGL1Q08830 312 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 FCN2Q15485 313 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 KRBOX4Q5JUW0 171 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 ATPAF1Q5TC12 328 aaPredicted RBP5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 ZNF880Q6PDB4 577 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 ZNF497Q6ZNH5 498 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 CMTM1Q8IZ96 169 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 ZNF561Q8N587 486 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 TEX29Q8N6K0 151 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 SIGLECL1Q8N7X8 197 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 ASCC1Q8N9N2 400 aaKnown RBP5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 MRPL30Q8TCC3 161 aaKnown RBP5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 MARCH1Q8TCQ1 289 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 NEU4Q8WWR8 484 aaPredicted RBP5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 MAFIPQ8WZ33 124 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 GALMQ96C23 342 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 KIRREL1Q96J84 757 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 HYLS1Q96M11 299 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 SEC22CQ9BRL7 303 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 FAM234AQ9H0X4 552 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 NCOR1P1Q9H4R4 102 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 GCM1Q9NP62 436 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 OR6C3Q9NZP0 311 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 COMMD9Q9P000 198 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 IL36RNQ9UBH0 155 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 SHPKQ9UHJ6 478 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 VSIG4Q9Y279 399 aa5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 RBM7Q9Y580 266 aaKnown RBP5.88□□□□□ -1.47
DEPDC4-208ENST00000549341 PPIAL4EA0A075B759 164 aa5.87□□□□□ -1.47
DEPDC4-208ENST00000549341 MEIKINA0A087WXM9 373 aa5.87□□□□□ -1.47
DEPDC4-208ENST00000549341 A0A0B4J293 547 aa5.87□□□□□ -1.47
DEPDC4-208ENST00000549341 C9orf170A2RU37 121 aa5.87□□□□□ -1.47
DEPDC4-208ENST00000549341 PPIAL4DF5H284 164 aa5.87□□□□□ -1.47
DEPDC4-208ENST00000549341 LGALS8O00214 317 aa5.87□□□□□ -1.47
DEPDC4-208ENST00000549341 WNT9BO14905 357 aa5.87□□□□□ -1.47
DEPDC4-208ENST00000549341 BET1O15155 118 aa5.87□□□□□ -1.47
DEPDC4-208ENST00000549341 SPINT2O43291 252 aa5.87□□□□□ -1.47
DEPDC4-208ENST00000549341 B3GALNT1O75752 331 aa5.87□□□□□ -1.47
DEPDC4-208ENST00000549341 SLC22A5O76082 557 aa5.87□□□□□ -1.47
DEPDC4-208ENST00000549341 RGS11O94810 467 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms