RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PIPOXQ9P0Z9 390 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 PHF3Q92576 2039 aaKnown RBP10.95□□□□□ -0.66
USP53-209ENST00000514665 MMP7P09237 267 aaPredicted RBP10.95□□□□□ -0.66
USP53-209ENST00000514665 APELAP0DMC3 54 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 BTCP35070 178 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 PCOLCEQ15113 449 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 CDCP2Q5VXM1 449 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 BHLHA15Q7RTS1 189 aaPredicted RBP10.95□□□□□ -0.66
USP53-209ENST00000514665 SLC24A4Q8NFF2 622 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 CHRDL1Q9BU40 450 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 RTN4RQ9BZR6 473 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 GAL3ST2Q9H3Q3 398 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 ONECUT1Q9UBC0 465 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 B4E171 279 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 NAT2P11245 290 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 TSPAN7P41732 249 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 B2MP61769 119 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 RNASEKQ6P5S7 137 aaKnown RBP10.95□□□□□ -0.66
USP53-209ENST00000514665 LINC00114Q6XXX2 140 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 RND1Q92730 232 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 Q96M66 194 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 AQP10Q96PS8 301 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 MESP1Q9BRJ9 268 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 GATCO43716 136 aaKnown RBP10.95□□□□□ -0.66
USP53-209ENST00000514665 CEBPDP49716 269 aaPredicted RBP10.95□□□□□ -0.66
USP53-209ENST00000514665 HFEQ30201 348 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 BCL2L2Q92843 193 aaPredicted RBP10.95□□□□□ -0.66
USP53-209ENST00000514665 NOL4LQ96MY1 436 aaPredicted RBP10.95□□□□□ -0.66
USP53-209ENST00000514665 SRD5A3Q9H8P0 318 aa10.95□□□□□ -0.66
USP53-209ENST00000514665 DICER1Q9UPY3 1922 aaKnown RBP10.94□□□□□ -0.66
USP53-209ENST00000514665 H0YL77 283 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 GAS1P54826 345 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 VAMP3Q15836 100 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 IER2Q9BTL4 223 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 GLRX2Q9NS18 164 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 IGKV3D-11A0A0A0MRZ8 115 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 M0R296 226 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 CRISP2P16562 243 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 RNF151Q2KHN1 245 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 KHDC3LQ587J8 217 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 INO80CQ6PI98 192 aaPredicted RBP10.94□□□□□ -0.66
USP53-209ENST00000514665 PACRGQ96M98 296 aaPredicted RBP10.94□□□□□ -0.66
USP53-209ENST00000514665 NDFIP1Q9BT67 221 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 SH3BGRL3Q9H299 93 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 CTXND1A0A1B0GTU2 59 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 FAM157CP0CG43 387 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 FOSL1P15407 271 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 NPY1RP25929 384 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 TGIF2LXQ8IUE1 241 aa10.94□□□□□ -0.66
USP53-209ENST00000514665 PPIHO43447 177 aaKnown RBP10.93□□□□□ -0.66
USP53-209ENST00000514665 ZNF253O75346 499 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 PITX3O75364 302 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 ZNF708P17019 499 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 LTBRP36941 435 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 REG1BP48304 166 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 CCL8P80075 99 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 LRRC75AQ8NAA5 344 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 SOSTQ9BQB4 213 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 WNT5BQ9H1J7 359 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 CLDN14O95500 239 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 OR2H2O95918 312 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 RFPL3SP0C7P2 107 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 BCL2P10415 239 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 COX6A1P12074 109 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 RIPPLY2Q5TAB7 128 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 ADTRPQ96IZ2 230 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 MANBALQ9NQG1 85 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 SLC2A8Q9NY64 477 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 DLL3Q9NYJ7 618 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 IL17BQ9UHF5 180 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 MPTX1A8MV57 137 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 HBZP02008 142 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 SMIM6P0DI80 62 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 TNXAQ16473 311 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 MRPL54Q6P161 138 aaKnown RBP10.93□□□□□ -0.66
USP53-209ENST00000514665 DHRS11Q6UWP2 260 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 KLHDC1Q8N7A1 406 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 OR1L1Q8NH94 360 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 ZNF407Q9C0G0 2248 aa10.93□□□□□ -0.66
USP53-209ENST00000514665 A0A087X0M5 115 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 A0A1B0GX30 115 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 NKX2-8O15522 239 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 PRDX2P32119 198 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 KHDC1LQ5JSQ8 128 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 C11orf42Q8N5U0 333 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 GPR146Q96CH1 333 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 ZNF837Q96EG3 531 aaPredicted RBP10.92□□□□□ -0.66
USP53-209ENST00000514665 GMPPAQ96IJ6 420 aaPredicted RBP10.92□□□□□ -0.66
USP53-209ENST00000514665 SAP30LQ9HAJ7 183 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 FKBP11Q9NYL4 201 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 COLQQ9Y215 455 aaPredicted RBP10.92□□□□□ -0.66
USP53-209ENST00000514665 SCN5AQ14524 2016 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 CENPFP49454 3210 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 A0A1W2PN81 502 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 LYPD3O95274 346 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 EFEMP2O95967 443 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 HNRNPA3P51991 378 aaKnown RBP10.92□□□□□ -0.66
USP53-209ENST00000514665 UCP2P55851 309 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 COL10A1Q03692 680 aa10.92□□□□□ -0.66
USP53-209ENST00000514665 H1FOOQ8IZA3 346 aaPredicted RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms