RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SPRED2Q7Z698 418 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 TTTY12Q9BZ98 90 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 TMEM140Q9NV12 185 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 AURKAIP1Q9NWT8 199 aaPredicted RBP14.26□□□□□ -0.13
COL7A1-210ENST00000487017 TUBD1Q9UJT1 453 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 RPL30P62888 115 aaKnown RBP14.26□□□□□ -0.13
COL7A1-210ENST00000487017 COL10A1Q03692 680 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 DCAF10Q5QP82 559 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 CTHRC1Q96CG8 243 aa14.26□□□□□ -0.13
COL7A1-210ENST00000487017 IGKV1D-42A0A075B6H8 117 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 SMPD2O60906 423 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 APCSP02743 223 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 HSPB1P04792 205 aaKnown RBP14.25□□□□□ -0.13
COL7A1-210ENST00000487017 STXBP6Q8NFX7 210 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 STARD4Q96DR4 205 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 ABHD14BQ96IU4 210 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 RAB1BQ9H0U4 201 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 SAP30LQ9HAJ7 183 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 ADAM11O75078 769 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 HPRT1P00492 218 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 SCGB1D4Q6XE38 83 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 RAB1CQ92928 201 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 LGALS7P47929 136 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 RPL24P83731 157 aaKnown RBP14.25□□□□□ -0.13
COL7A1-210ENST00000487017 LINC01590Q5TEZ4 76 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 LHFPL6Q9Y693 200 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 CD3EP07766 207 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 OR1L1Q8NH94 360 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 G6PC2Q9NQR9 355 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 SCN4AP35499 1836 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 RHBDL1O75783 438 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 ORM1P02763 201 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 ASCL5Q7RTU5 278 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 NUDT16L1Q9BRJ7 211 aaKnown RBP14.25□□□□□ -0.13
COL7A1-210ENST00000487017 RSG1Q9BU20 258 aa14.25□□□□□ -0.13
COL7A1-210ENST00000487017 IGHV3OR15-7A0A075B7D8 119 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A10PA6NDY2 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A18PA6NE21 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A16PA6NEW6 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A20PA6NIJ5 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A8PA6NJQ4 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A7PA6NKC0 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A22PA8MWA6 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A12PA8MX19 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A5PA8MXJ8 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A23PA8MXZ1 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 J3QR06 171 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 GNG7O60262 68 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 C1QL1O75973 258 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 SCTP09683 121 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A15PP0C7V4 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A13PP0C7W8 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A14PP0C7W9 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 FAM90A24PP0C7X0 464 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 OR1L8Q8NGR8 309 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 RASL11BQ9BPW5 248 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 ASCL3Q9NQ33 180 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 OR51B2Q9Y5P1 312 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 IGHV1-45A0A0A0MS14 117 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 ISLRO14498 428 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 MGPP08493 103 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 HIST1H1EP10412 219 aaKnown RBP14.24□□□□□ -0.13
COL7A1-210ENST00000487017 SBF2Q86WG5 1849 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 Q5BKY6 102 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 MARVELD3Q96A59 401 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 RPLP1P05386 114 aaKnown RBP14.24□□□□□ -0.13
COL7A1-210ENST00000487017 C5orf66Q9H5L9 145 aa14.24□□□□□ -0.13
COL7A1-210ENST00000487017 F2RL2O00254 374 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 CD74P04233 296 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 RBPMS2Q6ZRY4 209 aaKnown RBP14.23□□□□□ -0.13
COL7A1-210ENST00000487017 TMEM204Q9BSN7 226 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 WIPI2Q9Y4P8 454 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 WFDC3Q8IUB2 231 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 OR8B3Q8NGG8 313 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 OR8B2Q96RD0 313 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 UBTD1Q9HAC8 227 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 PRF1P14222 555 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 SGMS2Q8NHU3 365 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 FCARP24071 287 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 PRDX2P32119 198 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 OR2A4O95047 310 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 LDLRAD3Q86YD5 345 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 LRRC75AQ8NAA5 344 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 OR2A7Q96R45 310 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 NPVFQ9HCQ7 196 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 IL19Q9UHD0 177 aa14.23□□□□□ -0.13
COL7A1-210ENST00000487017 NRXN2Q9P2S2 1712 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 POLR2AP24928 1970 aaKnown RBP14.22□□□□□ -0.13
COL7A1-210ENST00000487017 CELA2AP08217 269 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 DOLPP1Q86YN1 238 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 OR2D3Q8NGH3 330 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 TLNRD1Q9H1K6 362 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 TCTAP57738 103 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 VN1R17PQ8TDU5 208 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 IGHMP01871 453 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 MELTFP08582 738 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 MDKP21741 143 aaPredicted RBP14.22□□□□□ -0.13
COL7A1-210ENST00000487017 WDFY1Q8IWB7 410 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 MRPL37Q9BZE1 423 aaKnown RBP14.22□□□□□ -0.13
COL7A1-210ENST00000487017 H3BVH4 76 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms