RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 HSD17B12Q53GQ0 312 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 RBM48Q5RL73 367 aaKnown RBP9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 ZNF833PQ6ZTB9 187 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 LRRTM1Q86UE6 522 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 OR2AK2Q8NG84 335 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 OR6M1Q8NGM8 313 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 OR5M8Q8NGP6 311 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 C4orf3Q8WVX3 66 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 FAM46BQ96A09 425 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 PIPOXQ9P0Z9 390 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 STEAP1Q9UHE8 339 aa9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 ZNF107Q9UII5 783 aaPredicted RBP9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 LSM2Q9Y333 95 aaKnown RBP9.52□□□□□ -0.89
SQSTM1-207ENST00000481335 TRBV6-6A0A0A6YYG2 114 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 ERICH4A6NGS2 130 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 LINC01548A6NM66 108 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 ZNF736B4DX44 427 aaPredicted RBP9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 NAPSAO96009 420 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 RPLP1P05386 114 aaKnown RBP9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 UCHL1P09936 223 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 F2RL1P55085 397 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 FHL3Q13643 280 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 NKAPLQ5M9Q1 402 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 FAM53AQ6NSI3 398 aaPredicted RBP9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 ZNF880Q6PDB4 577 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 C18orf65Q6ZTR6 163 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 ODF3L1Q8IXM7 274 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 SVOPQ8N4V2 548 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 MYOZ3Q8TDC0 251 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 UFD1Q92890 307 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 RAX2Q96IS3 184 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 NABP2Q9BQ15 211 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 HSPB9Q9BQS6 159 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 ZNF251Q9BRH9 671 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 URM1Q9BTM9 101 aaKnown RBP9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 ISYNA1Q9NPH2 558 aa9.51□□□□□ -0.89
SQSTM1-207ENST00000481335 WI2-2373I1.2A0A1W2PRP0 233 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 OR5H14A6NHG9 310 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 TMEM14DPA8MWL7 114 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 RAB29O14966 203 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 NBR2O15453 112 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 ARL6IP5O75915 188 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 NDUFA3O95167 84 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 HOXD3P31249 432 aaPredicted RBP9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 PPP1CCP36873 323 aaKnown RBP9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 ACTBP60709 375 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 DGCR2P98153 550 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 RUNX1Q01196 453 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 UNC119Q13432 240 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 GNMTQ14749 295 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 MED22Q15528 200 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 VAX1Q5SQQ9 334 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 C9orf66Q5T8R8 295 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 TCTEX1D1Q8N7M0 179 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 NPBQ8NG41 125 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 OR52L2PQ8NGH6 319 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 EDARADDQ8WWZ3 215 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 UBE2E2Q96LR5 201 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 KCTD7Q96MP8 289 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 B9D2Q9BPU9 175 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 SULT4A1Q9BR01 284 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 TMED9Q9BVK6 235 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 PLEKHJ1Q9NW61 149 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 KIAA1456Q9P272 454 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 HSF4Q9ULV5 492 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 TPRKBQ9Y3C4 175 aa9.5□□□□□ -0.89
SQSTM1-207ENST00000481335 SAA2-SAA4A0A096LPE2 208 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 RBBP9O75884 186 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 SAA2P0DJI9 122 aaPredicted RBP9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 PPIFP30405 207 aaKnown RBP9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 INSL3P51460 131 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 CRIP2P52943 208 aaPredicted RBP9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 QRFPP83859 136 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 TPBGQ13641 420 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 IRF3Q14653 427 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 C5orf64Q2M2E5 130 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 DEFB121Q5J5C9 76 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 FAM27D1Q5T7N8 215 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 C6orf201Q7Z4U5 140 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 CEACAM19Q7Z692 300 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 RNF5Q99942 180 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 MRPL20Q9BYC9 149 aaKnown RBP9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 IFI27L2Q9H2X8 130 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 OR51J1Q9H342 316 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 SLC23A1Q9UHI7 598 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 SORL1Q92673 2214 aa9.49□□□□□ -0.89
SQSTM1-207ENST00000481335 PTGES3LE9PB15 166 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 SLC17A2O00624 439 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 IGLV1-40P01703 118 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 OR8U8P0C7N1 319 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 SLC2A2P11168 524 aaPredicted RBP9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 ARSBP15848 533 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 MYF6P23409 242 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 ZBTB25P24278 435 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 BLVRBP30043 206 aaPredicted RBP9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 MC5RP33032 325 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 PSMD7P51665 324 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 CD69Q07108 199 aa9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 MLLT11Q13015 90 aaPredicted RBP9.48□□□□□ -0.89
SQSTM1-207ENST00000481335 INSL4Q14641 139 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms