RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 SLC25A42Q86VD7 318 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 DPH3Q96FX2 82 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 MFSD2BA6NFX1 497 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 OR2T8A6NH00 312 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 INHBBP09529 407 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 GFRA1P56159 465 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 FOXB2Q5VYV0 432 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 BHLHA9Q7RTU4 235 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 PRDM14Q9GZV8 571 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 HSPB8Q9UJY1 196 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 ANGPTL6Q8NI99 470 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 TBX19O60806 448 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 ZNF738Q8NE65 137 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 TNRC6AQ8NDV7 1962 aaKnown RBP10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 ZIC1Q15915 447 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 LIMS2Q7Z4I7 341 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 MSRB3Q8IXL7 192 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 OR1L6Q8NGR2 347 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 OR10J6PQ8NGY7 276 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 OR10C1Q96KK4 312 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 PPYP01298 95 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 PSG2P11465 335 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 FOXL2P58012 376 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 SPANXN1Q5VSR9 72 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 SOSTQ9BQB4 213 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 DUXBA0A1W2PPF3 345 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 PDE6DO43924 150 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 DEDDO75618 318 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 MBPP02686 304 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 RNASE1P07998 156 aaKnown RBP10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 A0A1B0GU03 582 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 KIR2DL2P43627 348 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 POLR2GP62487 172 aaKnown RBP eCLIP10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 ZNF841Q6ZN19 808 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 SPRED2Q7Z698 418 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 ISLRO14498 428 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 RGS13O14921 159 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 TO15178 435 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 TMEM33P57088 247 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 MIEN1Q9BRT3 115 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 PF4P02776 101 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 WNT5AP41221 380 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 P2RY6Q15077 328 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 RSPO4Q2I0M5 234 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 C1orf174Q8IYL3 243 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 CCL13Q99616 98 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 ZDHHC8Q9ULC8 765 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 PRR33A8MZF0 331 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 FGF9P31371 208 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 SCAND1P57086 179 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 SYT8Q8NBV8 401 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 PEBP1P30086 187 aaKnown RBP10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 SHISA5Q8N114 240 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 HOXD4P09016 255 aaPredicted RBP10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 MS4A10Q96PG2 267 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 TMEM204Q9BSN7 226 aa10.51□□□□□ -0.73
CCDC88A-207ENST00000436346 GZMHP20718 246 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 CLRN3Q8NCR9 226 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 LOXL4Q96JB6 756 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 NUDT16L1Q9BRJ7 211 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 LYRM2Q9NU23 88 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 CISD1Q9NZ45 108 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 A0A1W2PQF6 199 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 PRSS44E7EML9 344 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 DAOP14920 347 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 ACAA2P42765 397 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 TMEM50BP56557 158 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 PSG6Q00889 435 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 FFAR1O14842 300 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 ZNF137PP52743 207 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 IL24Q13007 206 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 LSMEM1Q8N8F7 131 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 RNF115Q9Y4L5 304 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 DHRS7CA6NNS2 312 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 SOCS1O15524 211 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 CLDN14O95500 239 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 MELTFP08582 738 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 J3QR06 171 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 ALX3O95076 343 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 PRDX2P32119 198 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 AMMECR1LQ6DCA0 310 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 XAF1Q6GPH4 301 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 NKX2-8O15522 239 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 MPV17LQ2QL34 196 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 C11orf91Q3C1V1 193 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 TMSB15BA0A087X1C1 80 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 KLF7O75840 302 aaPredicted RBP10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 ERVS71-1P61550 626 aa10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 SRSF9Q13242 221 aaKnown RBP eCLIP10.5□□□□□ -0.73
CCDC88A-207ENST00000436346 ANAPC16Q96DE5 110 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 CCDC168Q8NDH2 2452 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 OR5A2Q8NGI9 324 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 OR8D4Q8NGM9 314 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 DTX4Q9Y2E6 619 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 WIPI2Q9Y4P8 454 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 SYNGR2O43760 224 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 SSX1Q16384 188 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 C19orf54Q5BKX5 351 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 MRM1Q6IN84 353 aaKnown RBP10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 TEPPQ6URK8 271 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms