RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 OR2J1Q9GZK6 312 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 PRR32B1ATL7 298 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 CSN3P07498 182 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 ADH4P08319 380 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 RHOBP62745 196 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 FAM209BQ5JX69 171 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 KIAA1456Q9P272 454 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 PAM16Q9Y3D7 125 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 CRYM-AS1A6NIL9 109 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 ST8SIA5O15466 376 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 MT-CO3P00414 261 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 ISG15P05161 165 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 F2RP25116 425 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 UNC119Q13432 240 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 OR5I1Q13606 314 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.32□□□□□ -0.92
CCDC40-204ENST00000397545 TGIF2LXQ8IUE1 241 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 SLC25A45Q8N413 288 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 CPEB3Q8NE35 698 aaKnown RBP9.32□□□□□ -0.92
CCDC40-204ENST00000397545 OR1L4Q8NGR5 311 aa9.32□□□□□ -0.92
CCDC40-204ENST00000397545 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.32□□□□□ -0.924e-7■■■■□ 19.8
CCDC40-204ENST00000397545 RPL36A-HNRNPH2H7BZ11 118 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 GAPDHP04406 335 aaKnown RBP9.31□□□□□ -0.92
CCDC40-204ENST00000397545 SLC25A5P05141 298 aaKnown RBP9.31□□□□□ -0.92
CCDC40-204ENST00000397545 PSG5Q15238 335 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 FNDC7Q5VTL7 733 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 C10orf35Q96D05 121 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 FANCMQ8IYD8 2048 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 SPAARA0A1B0GVQ0 90 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 J3QT63 122 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 HAND1O96004 215 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 ACAA1P09110 424 aaPredicted RBP9.31□□□□□ -0.92
CCDC40-204ENST00000397545 APELAP0DMC3 54 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 GAS1P54826 345 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 SOX8P57073 446 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 FOXO1Q12778 655 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 TRA2AQ13595 282 aaKnown RBP eCLIP9.31□□□□□ -0.92
CCDC40-204ENST00000397545 CACFD1Q9UGQ2 172 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 USP34Q70CQ2 3546 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 VCANP13611 3396 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 PI4KAP42356 2102 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 A0A0U1RQV5 110 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 RBP4P02753 201 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 ZNF708P17019 499 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 NPBWR2P48146 333 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 FAM3BP58499 235 aaPredicted RBP9.31□□□□□ -0.92
CCDC40-204ENST00000397545 MRPS11P82912 194 aaKnown RBP9.31□□□□□ -0.92
CCDC40-204ENST00000397545 SLC25A47Q6Q0C1 308 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 SLC25A40Q8TBP6 338 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 AQP10Q96PS8 301 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 ZMAT5Q9UDW3 170 aaKnown RBP9.31□□□□□ -0.92
CCDC40-204ENST00000397545 A0A1B0GTQ1 180 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 SYNGR1O43759 233 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 FAM157CP0CG43 387 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 EIF3IQ13347 325 aaKnown RBP9.31□□□□□ -0.92
CCDC40-204ENST00000397545 KHDC3LQ587J8 217 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 MYO7BQ6PIF6 2116 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 TRAT1Q6PIZ9 186 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 OR5A2Q8NGI9 324 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 MARVELD3Q96A59 401 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 FAM131CQ96AQ9 280 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 BOD1Q96IK1 185 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 SOSTQ9BQB4 213 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 FKBP11Q9NYL4 201 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 SLC45A2Q9UMX9 530 aa9.31□□□□□ -0.92
CCDC40-204ENST00000397545 PHF3Q92576 2039 aaKnown RBP9.3□□□□□ -0.92
CCDC40-204ENST00000397545 TRAV17A0A0B4J275 112 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 TMEM14DPA8MWL7 114 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 ZIC3O60481 467 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 IER3P46695 156 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 RND3P61587 244 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 UBE2L3P68036 154 aaKnown RBP9.3□□□□□ -0.92
CCDC40-204ENST00000397545 SGMS2Q8NHU3 365 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 ABHD14BQ96IU4 210 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 WFIKKN1Q96NZ8 548 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 KCNMB2Q9Y691 235 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 LOC105371267A0A1B0GV96 52 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 A0A1W2PRD5 423 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 A0A1W2PRF3 423 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 A0A1W2PRM7 423 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 GATCO43716 136 aaKnown RBP9.3□□□□□ -0.92
CCDC40-204ENST00000397545 PTBP3O95758 552 aaKnown RBP9.3□□□□□ -0.92
CCDC40-204ENST00000397545 PGA5P0DJD9 388 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 BCL2P10415 239 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 EFNB1P98172 346 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 ATP6V1FQ16864 119 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 ZNF343Q6P1L6 599 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 SLC25A28Q96A46 364 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 ZPBPQ9BS86 351 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 SPEGQ15772 3267 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 NCOR2Q9Y618 2525 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 TRGV8A0A0C4DH27 118 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 A0A1B0GU03 582 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 CD74P04233 296 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 ARL16Q0P5N6 197 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 IGFBP7Q16270 282 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 ZNF826PQ6ZT77 177 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 RHOVQ96L33 236 aa9.3□□□□□ -0.92
CCDC40-204ENST00000397545 AKIRIN1Q9H9L7 192 aaPredicted RBP9.3□□□□□ -0.92
CCDC40-204ENST00000397545 SH2D2AQ9NP31 389 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms