RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 CMC4P56277 68 aaPredicted RBP4.25□□□□□ -1.73
PCDH9-201ENST00000377861 AWAT1Q58HT5 328 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 IGHV2-70P01814 119 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 RPLP1P05386 114 aaKnown RBP4.25□□□□□ -1.73
PCDH9-201ENST00000377861 C6orf201Q7Z4U5 140 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 ZNF383Q8NA42 475 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 OR4P4Q8NGL7 312 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 MRPL22Q9NWU5 206 aaKnown RBP4.25□□□□□ -1.73
PCDH9-201ENST00000377861 TRGC2P03986 189 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 PRDX2P32119 198 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 UCN2Q96RP3 112 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 SDF2L1Q9HCN8 221 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 ERVH48-1M5A8F1 160 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 TESK1Q15569 626 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 TMEM255AQ5JRV8 349 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 LYZL2Q7Z4W2 148 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 ZNF439Q8NDP4 499 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 ZNF750Q32MQ0 723 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 LTBP4Q8N2S1 1624 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 C8orf88P0DMB2 117 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 DEFB103AP81534 67 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 SMAD2Q15796 467 aaKnown RBP4.25□□□□□ -1.73
PCDH9-201ENST00000377861 OR4C5Q8NGB2 326 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 ELOVL1Q9BW60 279 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 DEFB133Q30KQ1 61 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 PIMREGQ9BSJ6 248 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 VN1R17PQ8TDU5 208 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 IGHV1OR15-9A0A0B4J2B8 117 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 CENPVL1A0A0U1RR11 272 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 LGALS4P56470 323 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 NRG2O14511 850 aaPredicted RBP4.25□□□□□ -1.73
PCDH9-201ENST00000377861 C10orf111Q8N326 155 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 TMEM170AQ8WVE7 144 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 WDYHV1Q96HA8 205 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 GOLT1BQ9Y3E0 138 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 BTCP35070 178 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 FMC1Q96HJ9 113 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 RCC1LQ96I51 464 aaKnown RBP4.25□□□□□ -1.73
PCDH9-201ENST00000377861 CDX2Q99626 313 aaPredicted RBP4.25□□□□□ -1.73
PCDH9-201ENST00000377861 hCG_38984A0A1B0GV85 526 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 ZNF761Q86XN6 746 aaPredicted RBP4.25□□□□□ -1.73
PCDH9-201ENST00000377861 OR10D3Q8NH80 312 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 ZNF552Q9H707 407 aaPredicted RBP4.25□□□□□ -1.73
PCDH9-201ENST00000377861 B4GALT3O60512 393 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 LPAR6P43657 344 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 PDE6HQ13956 83 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 TMEM106BQ9NUM4 274 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 DCAF16Q9NXF7 216 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 TBX6O95947 436 aaPredicted RBP4.25□□□□□ -1.73
PCDH9-201ENST00000377861 CEACAM16Q2WEN9 425 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 TMEM88Q6PEY1 159 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 PDPNQ86YL7 162 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 OR5A1Q8NGJ0 315 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 CLDND2Q8NHS1 167 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 DNAJA3Q96EY1 480 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 PRR33A8MZF0 331 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 ZP1P60852 638 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 OR1P1Q8NH06 330 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 WFDC1Q9HC57 220 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 GAB4Q2WGN9 574 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 BPIFA4PQ86YQ2 179 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 OR2T6Q8NHC8 308 aa4.25□□□□□ -1.73
PCDH9-201ENST00000377861 LHFPL6Q9Y693 200 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 ZC3H12DA2A288 527 aaKnown RBP4.24□□□□□ -1.73
PCDH9-201ENST00000377861 KIR3DL2P43630 455 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 OR9G4Q8NGQ1 327 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 B3GALT4O96024 378 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 SIAH2O43255 324 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 HTR1DP28221 377 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 TMEM37Q8WXS4 190 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 GLRXP35754 106 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 NMSQ5H8A3 153 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 PYY3Q5JQD4 70 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 C20orf144Q9BQM9 153 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 A6NIN4 97 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 CDIPTO14735 213 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 SSSCA1O60232 199 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 SOCS1O15524 211 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 HLA-DRB1P01911 266 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 PRSS3P2Q8NHM4 247 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 STARD4Q96DR4 205 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 SLC17A3O00476 420 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 PEF1Q9UBV8 284 aaKnown RBP4.24□□□□□ -1.73
PCDH9-201ENST00000377861 CIDEAO60543 219 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 CST7O76096 145 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 BCL6BQ8N143 479 aaPredicted RBP4.24□□□□□ -1.73
PCDH9-201ENST00000377861 ZNF665Q9H7R5 613 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 IGHV1-45A0A0A0MS14 117 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 SIVA1O15304 175 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 SLC25A5P05141 298 aaKnown RBP4.24□□□□□ -1.73
PCDH9-201ENST00000377861 RCL1Q9Y2P8 373 aaKnown RBP4.24□□□□□ -1.73
PCDH9-201ENST00000377861 ORM2P19652 201 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 ZFP62Q8NB50 900 aaPredicted RBP4.24□□□□□ -1.73
PCDH9-201ENST00000377861 C1orf61Q13536 156 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 LENEPQ9Y5L5 61 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 INSIG2Q9Y5U4 225 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 YPEL3P61236 119 aaPredicted RBP4.24□□□□□ -1.73
PCDH9-201ENST00000377861 ASPHD2Q6ICH7 369 aa4.24□□□□□ -1.73
PCDH9-201ENST00000377861 ZNF385AQ96PM9 386 aaKnown RBP4.24□□□□□ -1.73
PCDH9-201ENST00000377861 DHCR7Q9UBM7 475 aaKnown RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms