RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 MMP28Q9H239 520 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 AUNIPQ9H7T9 357 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 ELF5Q9UKW6 265 aaPredicted RBP12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 TRAV18A0A075B6X5 111 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 METTL21EPA6NDL7 271 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 BUB1B-PAK6H3BSN5 160 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 GPR137BO60478 399 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 HIST1H1DP16402 221 aaKnown RBP12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 PTBP1P26599 531 aaKnown RBP eCLIP12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 PRRX1P54821 245 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 SCAND1P57086 179 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 TAS2R20P59543 309 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 LY6EQ16553 131 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 CMSS1Q9BQ75 279 aaKnown RBP12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 THAP7Q9BT49 309 aaPredicted RBP12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 KCNIP1Q9NZI2 227 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 DPM3Q9P2X0 92 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 VPREB3Q9UKI3 123 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 TBC1D24Q9ULP9 559 aa12.17□□□□□ -0.46
SMPDL3A-201ENST00000368440 LY6LH3BQJ8 138 aa12.16□□□□□ -0.46
SMPDL3A-201ENST00000368440 SLC31A2O15432 143 aa12.16□□□□□ -0.46
SMPDL3A-201ENST00000368440 DEFA1P59665 94 aa12.16□□□□□ -0.46
SMPDL3A-201ENST00000368440 DEFA3P59666 94 aa12.16□□□□□ -0.46
SMPDL3A-201ENST00000368440 PITPNAQ00169 270 aa12.16□□□□□ -0.46
SMPDL3A-201ENST00000368440 OR52L2PQ8NGH6 319 aa12.16□□□□□ -0.46
SMPDL3A-201ENST00000368440 C12orf4Q9NQ89 552 aa12.16□□□□□ -0.46
SMPDL3A-201ENST00000368440 DIABLOQ9NR28 239 aa12.16□□□□□ -0.46
SMPDL3A-201ENST00000368440 TRBV6-6A0A0A6YYG2 114 aa12.15□□□□□ -0.46
SMPDL3A-201ENST00000368440 HLA-DQB1P01920 261 aa12.15□□□□□ -0.46
SMPDL3A-201ENST00000368440 FCER2P06734 321 aa12.15□□□□□ -0.46
SMPDL3A-201ENST00000368440 DIAPH2-AS1Q14236 149 aa12.15□□□□□ -0.46
SMPDL3A-201ENST00000368440 TPTE2P1Q5T6R2 138 aa12.15□□□□□ -0.46
SMPDL3A-201ENST00000368440 ZNF554Q86TJ5 538 aa12.15□□□□□ -0.46
SMPDL3A-201ENST00000368440 ZNF439Q8NDP4 499 aa12.15□□□□□ -0.46
SMPDL3A-201ENST00000368440 OR5R1Q8NH85 324 aa12.15□□□□□ -0.46
SMPDL3A-201ENST00000368440 GNG12Q9UBI6 72 aa12.15□□□□□ -0.46
SMPDL3A-201ENST00000368440 BTBD17A6NE02 478 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 LEUTXA8MZ59 168 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 XRCC3O43542 346 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 HKR1P10072 659 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 SPNP16150 400 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 ZNF134P52741 427 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 RELBQ01201 579 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 AANATQ16613 207 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 FBLN7Q53RD9 439 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 MOB1BQ7L9L4 216 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 CHPT1Q8WUD6 406 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 RIMS4Q9H426 269 aaPredicted RBP12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 Q9N2K0 584 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 TMEM89A2RUT3 159 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 MEIS3P1A6NDR6 274 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 PPP1CCP36873 323 aaKnown RBP12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 HLA-DRB3P79483 266 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 OR52I2Q8NH67 350 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 IL1F10Q8WWZ1 152 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 MAFIPQ8WZ33 124 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 RAB9BQ9NP90 201 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 OR2S2Q9NQN1 319 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 C1RLQ9NZP8 487 aa12.14□□□□□ -0.47
SMPDL3A-201ENST00000368440 TENM1Q9UKZ4 2725 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 FCGR3AP08637 254 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 SCTP09683 121 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 CD24P25063 80 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 OXA1LQ15070 435 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 TMEM30BQ3MIR4 351 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 CDNFQ49AH0 187 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 MORN2Q502X0 79 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 CT45A1Q5HYN5 189 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 CCBE1Q6UXH8 406 aaPredicted RBP12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 OR10X1Q8NGY0 326 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 CT45A3Q8NHU0 189 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 TRIM63Q969Q1 353 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 GALMQ96C23 342 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 C11orf54Q9H0W9 315 aaPredicted RBP12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 ZNF230Q9UIE0 474 aaPredicted RBP12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 JPT1Q9UK76 154 aa12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 AMMECR1Q9Y4X0 333 aaPredicted RBP12.13□□□□□ -0.47
SMPDL3A-201ENST00000368440 TMEM235A6NFC5 223 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 PLA2G10O15496 165 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 CHST1O43916 411 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 CEACAM3P40198 252 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 HTD2P86397 168 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 ARFRP1Q13795 201 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 ZNF260Q3ZCT1 412 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 SLC25A48Q6ZT89 311 aaKnown RBP12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 TMEM219Q86XT9 240 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 LINC00311Q8N616 119 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 C8orf31Q8N9H6 132 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 SMIM4Q8WVI0 70 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 FCAMRQ8WWV6 532 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 TOMM40LQ969M1 308 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 KLK11Q9UBX7 282 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 TCF19Q9Y242 345 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 DNHD1Q96M86 4753 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 IGKV1-6A0A0C4DH72 117 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 SERPINE3A8MV23 424 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 MNDAP41218 407 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 DYNLT3P51808 116 aa12.12□□□□□ -0.47
SMPDL3A-201ENST00000368440 MRPS15P82914 257 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms