RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 RNF122Q9H9V4 155 aa8.9□□□□□ -0.98
CLIP1-202ENST00000358808 SLC52A3Q9NQ40 469 aa8.9□□□□□ -0.98
CLIP1-202ENST00000358808 PITPNC1Q9UKF7 332 aa8.9□□□□□ -0.98
CLIP1-202ENST00000358808 WIPI2Q9Y4P8 454 aa8.9□□□□□ -0.98
CLIP1-202ENST00000358808 TRAV8-7A0A075B6U6 113 aa8.9□□□□□ -0.98
CLIP1-202ENST00000358808 S1PR2O95136 353 aa8.9□□□□□ -0.98
CLIP1-202ENST00000358808 PNRC1Q12796 327 aaPredicted RBP8.9□□□□□ -0.98
CLIP1-202ENST00000358808 CLEC18BQ6UXF7 455 aa8.9□□□□□ -0.98
CLIP1-202ENST00000358808 OVCH2Q7RTZ1 564 aa8.9□□□□□ -0.98
CLIP1-202ENST00000358808 MRGPRFQ96AM1 343 aa8.9□□□□□ -0.98
CLIP1-202ENST00000358808 EID2BQ96D98 161 aa8.9□□□□□ -0.98
CLIP1-202ENST00000358808 OPN3Q9H1Y3 402 aaPredicted RBP8.9□□□□□ -0.98
CLIP1-202ENST00000358808 HSPB7Q9UBY9 170 aa8.9□□□□□ -0.98
CLIP1-202ENST00000358808 CTSDP07339 412 aaPredicted RBP8.9□□□□□ -0.99
CLIP1-202ENST00000358808 CISD3P0C7P0 127 aa8.9□□□□□ -0.99
CLIP1-202ENST00000358808 ANOS1P23352 680 aa8.9□□□□□ -0.99
CLIP1-202ENST00000358808 KLF9Q13886 244 aaPredicted RBP8.9□□□□□ -0.99
CLIP1-202ENST00000358808 PRICKLE4Q2TBC4 344 aa8.9□□□□□ -0.99
CLIP1-202ENST00000358808 KRTCAP3Q53RY4 240 aa8.9□□□□□ -0.99
CLIP1-202ENST00000358808 SFRP2Q96HF1 295 aa8.9□□□□□ -0.99
CLIP1-202ENST00000358808 NEU1Q99519 415 aa8.9□□□□□ -0.99
CLIP1-202ENST00000358808 OR2W1Q9Y3N9 320 aa8.9□□□□□ -0.99
CLIP1-202ENST00000358808 J3QT63 122 aa8.9□□□□□ -0.99
CLIP1-202ENST00000358808 HYAL3O43820 417 aaPredicted RBP8.9□□□□□ -0.99
CLIP1-202ENST00000358808 MPC2O95563 127 aa8.9□□□□□ -0.99
CLIP1-202ENST00000358808 SNRPD3P62318 126 aaKnown RBP8.9□□□□□ -0.99
CLIP1-202ENST00000358808 SLC25A53Q5H9E4 307 aa8.9□□□□□ -0.99
CLIP1-202ENST00000358808 ZNF770Q6IQ21 691 aaPredicted RBP8.9□□□□□ -0.99
CLIP1-202ENST00000358808 DMRTA2Q96SC8 542 aa8.9□□□□□ -0.99
CLIP1-202ENST00000358808 AURKAIP1Q9NWT8 199 aaPredicted RBP8.9□□□□□ -0.99
CLIP1-202ENST00000358808 VAX2Q9UIW0 290 aa8.9□□□□□ -0.99
CLIP1-202ENST00000358808 ELOA3CA0A087WX78 387 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-202ENST00000358808 HBZP02008 142 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 CELA2BP08218 269 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-202ENST00000358808 PDLIM4P50479 330 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 VN1R17PQ8TDU5 208 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 FAM216AQ8WUB2 273 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 GALNT14Q96FL9 552 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 CISD1Q9NZ45 108 aaKnown RBP8.89□□□□□ -0.99
CLIP1-202ENST00000358808 CEACAM18A8MTB9 384 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 ACAA1P09110 424 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-202ENST00000358808 OR10J1P30954 320 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 PRSS41Q7RTY9 318 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 KLK15Q9H2R5 256 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 SIGLEC7Q9Y286 467 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.89□□□□□ -0.99
CLIP1-202ENST00000358808 PRR35P0CG20 571 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 DEGS2Q6QHC5 323 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 FGF11Q92914 225 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 PNLIPP16233 465 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 DLK1P80370 383 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 HCP5Q6MZN7 132 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 RASL10BQ96S79 203 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 PRSS27Q9BQR3 290 aa8.89□□□□□ -0.99
CLIP1-202ENST00000358808 C11orf68Q9H3H3 251 aaKnown RBP8.89□□□□□ -0.99
CLIP1-202ENST00000358808 PTPRZ1P23471 2315 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-202ENST00000358808 PRDX2P32119 198 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 NUTF2P61970 127 aaKnown RBP8.88□□□□□ -0.99
CLIP1-202ENST00000358808 PCSK4Q6UW60 755 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 A1L4Q6 167 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 FCGR3AP08637 254 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 PSG2P11465 335 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 FCARP24071 287 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 FCGR2BP31994 310 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-202ENST00000358808 CFAP161Q6P656 301 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 CDC42EP3Q9UKI2 254 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 F5P12259 2224 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 FABP2P12104 132 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 NCMAPQ5T1S8 102 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 UBE2DNLQ8IWF7 75 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 PAM16Q9Y3D7 125 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 CDKN2AP42771 156 aaKnown RBP8.88□□□□□ -0.99
CLIP1-202ENST00000358808 CD300CQ08708 224 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 PMS2CLQ68D20 193 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 RHBDD2Q6NTF9 364 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 ITLN2Q8WWU7 325 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-202ENST00000358808 MAP1LC3AQ9H492 121 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 SOX21Q9Y651 276 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-202ENST00000358808 A0A1W2PRX2 142 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 LEUTXA8MZ59 168 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 CTSVO60911 334 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 CTLA4P16410 223 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 PSG9Q00887 426 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 C10orf126Q8N4M7 172 aa8.88□□□□□ -0.99
CLIP1-202ENST00000358808 STARD6P59095 220 aa8.87□□□□□ -0.99
CLIP1-202ENST00000358808 B4GALNT1Q00973 533 aa8.87□□□□□ -0.99
CLIP1-202ENST00000358808 FBXW9Q5XUX1 488 aa8.87□□□□□ -0.99
CLIP1-202ENST00000358808 SPAG8Q99932 426 aaPredicted RBP8.87□□□□□ -0.99
CLIP1-202ENST00000358808 SLIRPQ9GZT3 109 aaKnown RBP8.87□□□□□ -0.99
CLIP1-202ENST00000358808 DIRC3C9JPN6 131 aa8.87□□□□□ -0.99
CLIP1-202ENST00000358808 MMP9P14780 707 aa8.87□□□□□ -0.99
CLIP1-202ENST00000358808 PIGYQ3MUY2 71 aa8.87□□□□□ -0.99
CLIP1-202ENST00000358808 IFT22Q9H7X7 185 aa8.87□□□□□ -0.99
CLIP1-202ENST00000358808 MTFP1Q9UDX5 166 aa8.87□□□□□ -0.99
CLIP1-202ENST00000358808 NTN1O95631 604 aa8.87□□□□□ -0.99
CLIP1-202ENST00000358808 DCAF10Q5QP82 559 aa8.87□□□□□ -0.99
CLIP1-202ENST00000358808 LINC00596Q86U02 117 aa8.87□□□□□ -0.99
CLIP1-202ENST00000358808 COL25A1Q9BXS0 654 aaPredicted RBP8.87□□□□□ -0.99
CLIP1-202ENST00000358808 TTTY12Q9BZ98 90 aa8.87□□□□□ -0.99
CLIP1-202ENST00000358808 LINC00470Q9BZP3 86 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms