RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 JPT1Q9UK76 154 aa15.53■□□□□ 0.08
SQSTM1-216ENST00000626660 PSG11Q9UQ72 335 aa15.53■□□□□ 0.08
SQSTM1-216ENST00000626660 AMMECR1Q9Y4X0 333 aaPredicted RBP15.53■□□□□ 0.08
SQSTM1-216ENST00000626660 MDFIC2A0A1B0GVS7 189 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 DPPA5A6NC42 116 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 J3QR06 171 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 RGS11O94810 467 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 IGHV3-7P01780 117 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 MELTFP08582 738 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 HTR1DP28221 377 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 GNG10P50151 68 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 SRSF7Q16629 238 aaKnown RBP eCLIP15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 TUSC1Q2TAM9 212 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 HLA-DRB5Q30154 266 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 OR10V1Q8NGI7 309 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 MCFD2Q8NI22 146 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 ZNF48Q96MX3 618 aaPredicted RBP15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 DCUN1D5Q9BTE7 237 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 C6orf62Q9GZU0 229 aaPredicted RBP15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 MMP28Q9H239 520 aa15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 ZNF230Q9UIE0 474 aaPredicted RBP15.52■□□□□ 0.08
SQSTM1-216ENST00000626660 FABP7O15540 132 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 HSPA12AO43301 675 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 IGLV1-47P01700 117 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 CEACAM3P40198 252 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 BAMBIQ13145 260 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 LHFPL4Q7Z7J7 247 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 PRIMA1Q86XR5 153 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 C8orf31Q8N9H6 132 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 OR52L2PQ8NGH6 319 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 OR4P4Q8NGL7 312 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 OR4A4PQ8NGN8 299 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 OR10X1Q8NGY0 326 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 MAFIPQ8WZ33 124 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 MALSU1Q96EH3 234 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 ST6GALNAC5Q9BVH7 336 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 SLIRPQ9GZT3 109 aaKnown RBP15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 PRDM13Q9H4Q3 707 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 DPM3Q9P2X0 92 aa15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 MRPS7Q9Y2R9 242 aaKnown RBP15.51■□□□□ 0.07
SQSTM1-216ENST00000626660 LEUTXA8MZ59 168 aa15.5■□□□□ 0.07
SQSTM1-216ENST00000626660 CTDSP2O14595 271 aa15.5■□□□□ 0.07
SQSTM1-216ENST00000626660 SSX5O60225 188 aa15.5■□□□□ 0.07
SQSTM1-216ENST00000626660 SCTP09683 121 aa15.5■□□□□ 0.07
SQSTM1-216ENST00000626660 PPP1CCP36873 323 aaKnown RBP15.5■□□□□ 0.07
SQSTM1-216ENST00000626660 CBX5P45973 191 aa15.5■□□□□ 0.07
SQSTM1-216ENST00000626660 HILS1P60008 231 aa15.5■□□□□ 0.07
SQSTM1-216ENST00000626660 UTF1Q5T230 341 aa15.5■□□□□ 0.07
SQSTM1-216ENST00000626660 Q6ZS49 121 aa15.5■□□□□ 0.07
SQSTM1-216ENST00000626660 C5orf24Q7Z6I8 188 aa15.5■□□□□ 0.07
SQSTM1-216ENST00000626660 SPATA3Q8NHX4 192 aa15.5■□□□□ 0.07
SQSTM1-216ENST00000626660 EXTL2Q9UBQ6 330 aa15.5■□□□□ 0.07
SQSTM1-216ENST00000626660 BUB1B-PAK6H3BSN5 160 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 YPEL1O60688 119 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 ZBTB25P24278 435 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 IL3RAP26951 378 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 PRSS3P35030 304 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 GNMTQ14749 295 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 SSX2Q16385 188 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 MORN2Q502X0 79 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 Q6YL49 198 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 LDLRAD3Q86YD5 345 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 LAX1Q8IWV1 398 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 LINC00311Q8N616 119 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 C17orf50Q8WW18 174 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 SSMEM1Q8WWF3 244 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 YPEL2Q96QA6 119 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 MIXL1Q9H2W2 232 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 ZNRD1Q9P1U0 126 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 SLC23A1Q9UHI7 598 aa15.49■□□□□ 0.07
SQSTM1-216ENST00000626660 A0A1W2PPE3 182 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 BTBD17A6NE02 478 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 DIRAS3O95661 229 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 PTHLHP12272 177 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 ARHGDIBP52566 201 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 MADCAM1Q13477 382 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 LY6G6FQ5SQ64 297 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 FAM53AQ6NSI3 398 aaPredicted RBP15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 SLC25A48Q6ZT89 311 aaKnown RBP15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 SNX29P2Q8IUI4 249 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 C15orf40Q8WUR7 153 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 AJUBAQ96IF1 538 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 OCSTAMPQ9BR26 566 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 MEGF9Q9H1U4 602 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 DPAGT1Q9H3H5 408 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 IFT46Q9NQC8 304 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 HILPDAQ9Y5L2 63 aa15.48■□□□□ 0.07
SQSTM1-216ENST00000626660 DNAJC9-AS1A6NH13 148 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 BET1O15155 118 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 HOXA3O43365 443 aaPredicted RBP15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 TPPPO94811 219 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 GSTT2P0CG29 244 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 GSTT2BP0CG30 244 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 CEACAM6P40199 344 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 CNIH2Q6PI25 160 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 ZNF439Q8NDP4 499 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 OR2AK2Q8NG84 335 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 OR10J5Q8NHC4 309 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 EDARADDQ8WWZ3 215 aa15.47■□□□□ 0.07
SQSTM1-216ENST00000626660 TOMM40LQ969M1 308 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms