RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 DNTTIP1Q9H147 329 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 PIGMQ9H3S5 423 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 TREM1Q9NP99 234 aa8.97□□□□□ -0.97
CUX1-221ENST00000622516 TPRP12270 2363 aaKnown RBP8.96□□□□□ -0.97
CUX1-221ENST00000622516 AHRRA9YTQ3 701 aa8.96□□□□□ -0.97
CUX1-221ENST00000622516 SH2D1BO14796 132 aa8.96□□□□□ -0.97
CUX1-221ENST00000622516 CEACAM4O75871 244 aa8.96□□□□□ -0.97
CUX1-221ENST00000622516 CST7O76096 145 aa8.96□□□□□ -0.97
CUX1-221ENST00000622516 CNOT4O95628 575 aaKnown RBP8.96□□□□□ -0.97
CUX1-221ENST00000622516 TMEM11P17152 192 aa8.96□□□□□ -0.97
CUX1-221ENST00000622516 NKX2-1P43699 371 aaPredicted RBP8.96□□□□□ -0.97
CUX1-221ENST00000622516 TESK1Q15569 626 aa8.96□□□□□ -0.97
CUX1-221ENST00000622516 SPRNQ5BIV9 151 aa8.96□□□□□ -0.97
CUX1-221ENST00000622516 C22orf34Q6ZV56 151 aa8.96□□□□□ -0.97
CUX1-221ENST00000622516 BHLHA15Q7RTS1 189 aaPredicted RBP8.96□□□□□ -0.97
CUX1-221ENST00000622516 SH3BGRL2Q9UJC5 107 aa8.96□□□□□ -0.97
CUX1-221ENST00000622516 PTPRQQ9UMZ3 2332 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 IGHV2OR16-5A0A0B4J2B6 119 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 PTBP3O95758 552 aaKnown RBP8.96□□□□□ -0.98
CUX1-221ENST00000622516 TMEM50AO95807 157 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 CGAP01215 116 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 IGLV2-14P01704 120 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 GNMTQ14749 295 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 GUCA2BQ16661 112 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 OR2B11Q5JQS5 317 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 ZNF474Q6S9Z5 364 aaPredicted RBP8.96□□□□□ -0.98
CUX1-221ENST00000622516 ZNF497Q6ZNH5 498 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 LINC00596Q86U02 117 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 H1FOOQ8IZA3 346 aaPredicted RBP8.96□□□□□ -0.98
CUX1-221ENST00000622516 OR2Z1Q8NG97 314 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 OR1L1Q8NH94 360 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 RFESDQ8TAC1 157 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 S100PBPQ96BU1 408 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 TMEM56Q96MV1 263 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 RIMS4Q9H426 269 aaPredicted RBP8.96□□□□□ -0.98
CUX1-221ENST00000622516 FAM215AQ9Y5M1 114 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 TMEM56-RWDD3S4R434 201 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 LRBAP50851 2863 aa8.96□□□□□ -0.98
CUX1-221ENST00000622516 TACC2O95359 2948 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 M0R1B8 84 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 TAAR5O14804 337 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 JTBO76095 146 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 CTXN2P0C2S0 81 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 F2RP25116 425 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 GCH1P30793 250 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 LTC4SQ16873 150 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 Q6ZRG5 221 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 Q6ZRM9 215 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 RBMXL3Q8N7X1 1067 aaKnown RBP8.95□□□□□ -0.98
CUX1-221ENST00000622516 ARL11Q969Q4 196 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 DCTN5Q9BTE1 182 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 PLEKHA2Q9HB19 425 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 TMEM218A2RU14 115 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 OR3A1P47881 315 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 LINC00205P59089 165 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 ZNF146Q15072 292 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 SRSF7Q16629 238 aaKnown RBP eCLIP8.95□□□□□ -0.981e-8■■■■■ 28.4
CUX1-221ENST00000622516 ZNF880Q6PDB4 577 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 WDR82Q6UXN9 313 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 FAM185AQ8N0U4 392 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 OR10V1Q8NGI7 309 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 TREM2Q9NZC2 230 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 TAAR3PQ9P1P4 343 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 POMT1Q9Y6A1 747 aa8.95□□□□□ -0.98
CUX1-221ENST00000622516 IGHV3-43A0A0B4J1X8 118 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 IGSF23A1L1A6 192 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 OR5H1A6NKK0 313 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 FAM74A7A6NL05 159 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 DEFB108AA8MXU0 73 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 CHST1O43916 411 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 IGHV3-13P01766 116 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 IGHV3-7P01780 117 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 SERPINE2P07093 398 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 IGHV3-43DP0DP04 118 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 UCP1P25874 307 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 GABRA2P47869 451 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 ZNF616Q08AN1 781 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 FAM74A3Q4VXF1 159 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 TMEM88Q6PEY1 159 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 ZNF808Q8N4W9 903 aaPredicted RBP8.94□□□□□ -0.98
CUX1-221ENST00000622516 OR52L2PQ8NGH6 319 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 RNASE11Q8TAA1 199 aaKnown RBP8.94□□□□□ -0.98
CUX1-221ENST00000622516 SNIP1Q8TAD8 396 aaKnown RBP8.94□□□□□ -0.98
CUX1-221ENST00000622516 MRGPRDQ8TDS7 321 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 TLNRD1Q9H1K6 362 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 RHOFQ9HBH0 211 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 GPR137BO60478 399 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 MUC1P15941 1255 aaPredicted RBP8.94□□□□□ -0.98
CUX1-221ENST00000622516 VDAC1P21796 283 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 BMP5P22003 454 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 BLOC1S1P78537 153 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 EWSR1Q01844 656 aaKnown RBP eCLIP8.94□□□□□ -0.982e-6■■■□□ 16.3
CUX1-221ENST00000622516 EDDM3AQ14507 147 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 ZNF718Q3SXZ3 478 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 NMSQ5H8A3 153 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 Q8IYB0 196 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 OR2C3Q8N628 320 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 TSNAXQ99598 290 aaKnown RBP8.94□□□□□ -0.98
CUX1-221ENST00000622516 C9JQL5 133 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 J3QW42 95 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms