RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 STEAP3Q658P3 488 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 ELP2Q6IA86 826 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 SLC16A13Q7RTY0 426 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 LFNGQ8NES3 379 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 UBALD1Q8TB05 177 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 RDH12Q96NR8 316 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 NR1H4Q96RI1 486 aaPredicted RBP13.52□□□□□ -0.25
CLK3-227ENST00000570296 TEX12Q9BXU0 123 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 CLN6Q9NWW5 311 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 ADAM30Q9UKF2 790 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 TMEM30CPA0ZSE6 113 aa13.51□□□□□ -0.25
CLK3-227ENST00000570296 PRSS29PA6NIE9 313 aa13.51□□□□□ -0.25
CLK3-227ENST00000570296 H3BUA1 57 aa13.51□□□□□ -0.25
CLK3-227ENST00000570296 SPRY2O43597 315 aa13.51□□□□□ -0.25
CLK3-227ENST00000570296 ZNF20P17024 532 aa13.51□□□□□ -0.25
CLK3-227ENST00000570296 RPEL1Q2QD12 228 aa13.51□□□□□ -0.25
CLK3-227ENST00000570296 TMEM30BQ3MIR4 351 aa13.51□□□□□ -0.25
CLK3-227ENST00000570296 Q6ZWC4 215 aa13.51□□□□□ -0.25
CLK3-227ENST00000570296 DPCDQ9BVM2 203 aaPredicted RBP13.51□□□□□ -0.25
CLK3-227ENST00000570296 ZC4H2Q9NQZ6 224 aa13.51□□□□□ -0.25
CLK3-227ENST00000570296 TMEM225BP0DP42 221 aa13.5□□□□□ -0.25
CLK3-227ENST00000570296 PRDX6P30041 224 aa13.5□□□□□ -0.25
CLK3-227ENST00000570296 DYRK1AQ13627 763 aa13.5□□□□□ -0.25
CLK3-227ENST00000570296 GUCA2BQ16661 112 aa13.5□□□□□ -0.25
CLK3-227ENST00000570296 OR2T5Q6IEZ7 315 aa13.5□□□□□ -0.25
CLK3-227ENST00000570296 TMEM179BQ7Z7N9 219 aa13.5□□□□□ -0.25
CLK3-227ENST00000570296 POC5Q8NA72 575 aa13.5□□□□□ -0.25
CLK3-227ENST00000570296 OR2T29Q8NH02 315 aa13.5□□□□□ -0.25
CLK3-227ENST00000570296 FGGYQ96C11 551 aa13.5□□□□□ -0.25
CLK3-227ENST00000570296 RNF183Q96D59 192 aa13.5□□□□□ -0.25
CLK3-227ENST00000570296 FAM103A1Q9BTL3 118 aaKnown RBP13.5□□□□□ -0.25
CLK3-227ENST00000570296 MRPL20Q9BYC9 149 aaKnown RBP13.5□□□□□ -0.25
CLK3-227ENST00000570296 FBXL15Q9H469 300 aa13.5□□□□□ -0.25
CLK3-227ENST00000570296 GNG12Q9UBI6 72 aa13.5□□□□□ -0.25
CLK3-227ENST00000570296 PEF1Q9UBV8 284 aaKnown RBP13.5□□□□□ -0.25
CLK3-227ENST00000570296 RRHO14718 337 aa13.49□□□□□ -0.25
CLK3-227ENST00000570296 MITFO75030 526 aaPredicted RBP13.49□□□□□ -0.25
CLK3-227ENST00000570296 GK3PQ14409 553 aa13.49□□□□□ -0.25
CLK3-227ENST00000570296 PRSS35Q8N3Z0 413 aa13.49□□□□□ -0.25
CLK3-227ENST00000570296 SUMF2Q8NBJ7 301 aa13.49□□□□□ -0.25
CLK3-227ENST00000570296 DYNLRB2Q8TF09 96 aa13.49□□□□□ -0.25
CLK3-227ENST00000570296 GIPC3Q8TF64 312 aa13.49□□□□□ -0.25
CLK3-227ENST00000570296 ADGRL4Q9HBW9 690 aa13.49□□□□□ -0.25
CLK3-227ENST00000570296 RAB9BQ9NP90 201 aa13.49□□□□□ -0.25
CLK3-227ENST00000570296 ZNF355PQ9NSJ1 428 aa13.49□□□□□ -0.25
CLK3-227ENST00000570296 GAB2Q9UQC2 676 aa13.49□□□□□ -0.25
CLK3-227ENST00000570296 FCN1O00602 326 aa13.48□□□□□ -0.25
CLK3-227ENST00000570296 OSMP13725 252 aa13.48□□□□□ -0.25
CLK3-227ENST00000570296 AADACP22760 399 aa13.48□□□□□ -0.25
CLK3-227ENST00000570296 PLGLAQ15195 96 aa13.48□□□□□ -0.25
CLK3-227ENST00000570296 DEFB114Q30KQ6 69 aa13.48□□□□□ -0.25
CLK3-227ENST00000570296 GVQW1Q8N7I0 195 aa13.48□□□□□ -0.25
CLK3-227ENST00000570296 TSEN15Q8WW01 171 aaKnown RBP13.48□□□□□ -0.25
CLK3-227ENST00000570296 METTL15A6NJ78 407 aa13.47□□□□□ -0.25
CLK3-227ENST00000570296 XRCC3O43542 346 aa13.47□□□□□ -0.25
CLK3-227ENST00000570296 KIR2DS2P43631 304 aa13.47□□□□□ -0.25
CLK3-227ENST00000570296 TMEM244Q5VVB8 128 aa13.47□□□□□ -0.25
CLK3-227ENST00000570296 ZNF343Q6P1L6 599 aa13.47□□□□□ -0.25
CLK3-227ENST00000570296 ZNF562Q6V9R5 426 aa13.47□□□□□ -0.25
CLK3-227ENST00000570296 SSX6Q7RTT6 188 aa13.47□□□□□ -0.25
CLK3-227ENST00000570296 TCEANCQ8N8B7 351 aa13.47□□□□□ -0.25
CLK3-227ENST00000570296 OR10V1Q8NGI7 309 aa13.47□□□□□ -0.25
CLK3-227ENST00000570296 OR13C9Q8NGT0 318 aa13.47□□□□□ -0.25
CLK3-227ENST00000570296 IFT22Q9H7X7 185 aa13.47□□□□□ -0.25
CLK3-227ENST00000570296 TAGLN3Q9UI15 199 aa13.47□□□□□ -0.25
CLK3-227ENST00000570296 SPINT2O43291 252 aa13.46□□□□□ -0.25
CLK3-227ENST00000570296 SULT1C4O75897 302 aa13.46□□□□□ -0.25
CLK3-227ENST00000570296 TRBV12-3P01733 135 aa13.46□□□□□ -0.25
CLK3-227ENST00000570296 IFNA4P05014 189 aa13.46□□□□□ -0.25
CLK3-227ENST00000570296 MNAT1P51948 309 aa13.46□□□□□ -0.25
CLK3-227ENST00000570296 PIGYQ3MUY2 71 aa13.46□□□□□ -0.25
CLK3-227ENST00000570296 PXT1Q8NFP0 134 aa13.46□□□□□ -0.25
CLK3-227ENST00000570296 C2CD4CQ8TF44 421 aa13.46□□□□□ -0.25
CLK3-227ENST00000570296 CCDC107Q8WV48 283 aa13.46□□□□□ -0.25
CLK3-227ENST00000570296 NDE1Q9NXR1 346 aa13.46□□□□□ -0.25
CLK3-227ENST00000570296 TVP23BQ9NYZ1 205 aa13.46□□□□□ -0.25
CLK3-227ENST00000570296 TECRQ9NZ01 308 aaKnown RBP13.46□□□□□ -0.25
CLK3-227ENST00000570296 APOC4P55056 127 aa13.45□□□□□ -0.26
CLK3-227ENST00000570296 KISS1Q15726 138 aa13.45□□□□□ -0.26
CLK3-227ENST00000570296 DEFB135Q30KP9 77 aa13.45□□□□□ -0.26
CLK3-227ENST00000570296 TMEM236Q5W0B7 351 aa13.45□□□□□ -0.26
CLK3-227ENST00000570296 SNAPC3Q92966 411 aa13.45□□□□□ -0.26
CLK3-227ENST00000570296 WDR89Q96FK6 387 aaPredicted RBP13.45□□□□□ -0.26
CLK3-227ENST00000570296 MFFQ9GZY8 342 aa13.45□□□□□ -0.26
CLK3-227ENST00000570296 MAGIXQ9H6Y5 334 aa13.45□□□□□ -0.26
CLK3-227ENST00000570296 A0A0B4J203 849 aa13.44□□□□□ -0.26
CLK3-227ENST00000570296 UBE2CO00762 179 aa13.44□□□□□ -0.26
CLK3-227ENST00000570296 RTL8CO15255 209 aa13.44□□□□□ -0.26
CLK3-227ENST00000570296 ZSCAN26Q16670 478 aa13.44□□□□□ -0.26
CLK3-227ENST00000570296 ZNF575Q86XF7 245 aa13.44□□□□□ -0.26
CLK3-227ENST00000570296 ODF3L1Q8IXM7 274 aa13.44□□□□□ -0.26
CLK3-227ENST00000570296 BVESQ8NE79 360 aa13.44□□□□□ -0.26
CLK3-227ENST00000570296 NSL1Q96IY1 281 aa13.44□□□□□ -0.26
CLK3-227ENST00000570296 ABHD14AQ9BUJ0 271 aa13.44□□□□□ -0.26
CLK3-227ENST00000570296 MT-ND4P03905 459 aa13.43□□□□□ -0.26
CLK3-227ENST00000570296 ISG15P05161 165 aa13.43□□□□□ -0.26
CLK3-227ENST00000570296 RBMS2Q15434 407 aaKnown RBP13.43□□□□□ -0.26
CLK3-227ENST00000570296 ZNF691Q5VV52 312 aa13.43□□□□□ -0.26
CLK3-227ENST00000570296 ZNF497Q6ZNH5 498 aa13.43□□□□□ -0.26
CLK3-227ENST00000570296 ZNF833PQ6ZTB9 187 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms