RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 GNMTQ14749 295 aa17.66■□□□□ 0.42
CLN3-209ENST00000561689 LTC4SQ16873 150 aa17.66■□□□□ 0.42
CLN3-209ENST00000561689 LPCAT3Q6P1A2 487 aa17.66■□□□□ 0.42
CLN3-209ENST00000561689 HYLS1Q96M11 299 aa17.66■□□□□ 0.42
CLN3-209ENST00000561689 UBR5O95071 2799 aaPredicted RBP17.66■□□□□ 0.42
CLN3-209ENST00000561689 TNFRSF13BO14836 293 aaPredicted RBP17.66■□□□□ 0.42
CLN3-209ENST00000561689 SPINT2O43291 252 aa17.66■□□□□ 0.42
CLN3-209ENST00000561689 ADAM20O43506 726 aa17.66■□□□□ 0.42
CLN3-209ENST00000561689 IFNA2P01563 188 aa17.66■□□□□ 0.42
CLN3-209ENST00000561689 NDUFB7P17568 137 aa17.66■□□□□ 0.42
CLN3-209ENST00000561689 SP6Q3SY56 376 aa17.66■□□□□ 0.42
CLN3-209ENST00000561689 GPHA2Q96T91 129 aa17.66■□□□□ 0.42
CLN3-209ENST00000561689 SLC25A10Q9UBX3 287 aaPredicted RBP17.66■□□□□ 0.42
CLN3-209ENST00000561689 FBXO9Q9UK97 447 aaPredicted RBP17.66■□□□□ 0.42
CLN3-209ENST00000561689 RAI1Q7Z5J4 1906 aaPredicted RBP17.65■□□□□ 0.42
CLN3-209ENST00000561689 IGHV3-43A0A0B4J1X8 118 aa17.65■□□□□ 0.42
CLN3-209ENST00000561689 IGHV3-43DP0DP04 118 aa17.65■□□□□ 0.42
CLN3-209ENST00000561689 SRSF1Q07955 248 aaKnown RBP eCLIP17.65■□□□□ 0.42
CLN3-209ENST00000561689 LY6G6FQ5SQ64 297 aa17.65■□□□□ 0.42
CLN3-209ENST00000561689 TRAT1Q6PIZ9 186 aa17.65■□□□□ 0.42
CLN3-209ENST00000561689 OR10V1Q8NGI7 309 aa17.65■□□□□ 0.42
CLN3-209ENST00000561689 OR2T35Q8NGX2 323 aa17.65■□□□□ 0.42
CLN3-209ENST00000561689 C14orf79Q96F83 325 aa17.65■□□□□ 0.42
CLN3-209ENST00000561689 NAA60Q9H7X0 242 aa17.65■□□□□ 0.42
CLN3-209ENST00000561689 OR2S2Q9NQN1 319 aa17.65■□□□□ 0.42
CLN3-209ENST00000561689 OR6C3Q9NZP0 311 aa17.65■□□□□ 0.42
CLN3-209ENST00000561689 ITGB1BP2Q9UKP3 347 aa17.65■□□□□ 0.42
CLN3-209ENST00000561689 FCN3O75636 299 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 OR2A4O95047 310 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 PPP1CCP36873 323 aaKnown RBP17.64■□□□□ 0.41
CLN3-209ENST00000561689 CR1LQ2VPA4 569 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 COQ8AQ8NI60 647 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 GRPEL2Q8TAA5 225 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 OR2A7Q96R45 310 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 RBM7Q9Y580 266 aaKnown RBP17.64■□□□□ 0.41
CLN3-209ENST00000561689 GPR31O00270 319 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 RP2O75695 350 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 GIPP09681 153 aaPredicted RBP17.64■□□□□ 0.41
CLN3-209ENST00000561689 OR8U9P0C7N5 309 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 OMGP23515 440 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 CDKN1AP38936 164 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 LUMP51884 338 aaPredicted RBP17.64■□□□□ 0.41
CLN3-209ENST00000561689 OR8U1Q8NH10 309 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 NINJ1Q92982 152 aa17.64■□□□□ 0.41
CLN3-209ENST00000561689 KLF2Q9Y5W3 355 aaPredicted RBP17.64■□□□□ 0.41
CLN3-209ENST00000561689 CHD6Q8TD26 2715 aa17.63■□□□□ 0.41
CLN3-209ENST00000561689 DBX1A6NMT0 343 aa17.63■□□□□ 0.41
CLN3-209ENST00000561689 FAM25EA8MYX2 175 aa17.63■□□□□ 0.41
CLN3-209ENST00000561689 G3V3Q6 166 aa17.63■□□□□ 0.41
CLN3-209ENST00000561689 TNFSF12O43508 249 aa17.63■□□□□ 0.41
CLN3-209ENST00000561689 OR5AC1P0C628 307 aa17.63■□□□□ 0.41
CLN3-209ENST00000561689 CCDC71LQ8N9Z2 235 aa17.63■□□□□ 0.41
CLN3-209ENST00000561689 OR5M8Q8NGP6 311 aa17.63■□□□□ 0.41
CLN3-209ENST00000561689 GON7Q9BXV9 100 aa17.63■□□□□ 0.41
CLN3-209ENST00000561689 NCOR1P1Q9H4R4 102 aa17.63■□□□□ 0.41
CLN3-209ENST00000561689 CTSZQ9UBR2 303 aa17.63■□□□□ 0.41
CLN3-209ENST00000561689 OPN4Q9UHM6 478 aa17.63■□□□□ 0.41
CLN3-209ENST00000561689 MPPED1O15442 326 aa17.62■□□□□ 0.41
CLN3-209ENST00000561689 TCF23Q7RTU1 214 aa17.62■□□□□ 0.41
CLN3-209ENST00000561689 TBC1D26Q86UD7 250 aa17.62■□□□□ 0.41
CLN3-209ENST00000561689 NEU4Q8WWR8 484 aaPredicted RBP17.62■□□□□ 0.41
CLN3-209ENST00000561689 RANBP3Q9H6Z4 567 aaPredicted RBP17.62■□□□□ 0.41
CLN3-209ENST00000561689 CALYQ9NYX4 217 aa17.62■□□□□ 0.41
CLN3-209ENST00000561689 KCNIP3Q9Y2W7 256 aa17.62■□□□□ 0.41
CLN3-209ENST00000561689 KMT2BQ9UMN6 2715 aaPredicted RBP17.62■□□□□ 0.41
CLN3-209ENST00000561689 TRGV10A0A0A0MS01 117 aa17.62■□□□□ 0.41
CLN3-209ENST00000561689 ADAP1O75689 374 aa17.62■□□□□ 0.41
CLN3-209ENST00000561689 DAOP14920 347 aa17.62■□□□□ 0.41
CLN3-209ENST00000561689 NDUFA5Q16718 116 aa17.62■□□□□ 0.41
CLN3-209ENST00000561689 AVPI1Q5T686 147 aa17.62■□□□□ 0.41
CLN3-209ENST00000561689 SEC22AQ96IW7 307 aa17.62■□□□□ 0.41
CLN3-209ENST00000561689 KCNS2Q9ULS6 477 aa17.62■□□□□ 0.41
CLN3-209ENST00000561689 UTP20O75691 2785 aaKnown RBP17.61■□□□□ 0.41
CLN3-209ENST00000561689 NDUFB3O43676 98 aa17.61■□□□□ 0.41
CLN3-209ENST00000561689 IGLV2-14P01704 120 aa17.61■□□□□ 0.41
CLN3-209ENST00000561689 CGB3P0DN86 165 aa17.61■□□□□ 0.41
CLN3-209ENST00000561689 CGB7P0DN87 165 aa17.61■□□□□ 0.41
CLN3-209ENST00000561689 RAP2BP61225 183 aa17.61■□□□□ 0.41
CLN3-209ENST00000561689 HTD2P86397 168 aa17.61■□□□□ 0.41
CLN3-209ENST00000561689 CMTM1Q8IZ96 169 aa17.61■□□□□ 0.41
CLN3-209ENST00000561689 FAM185AQ8N0U4 392 aa17.61■□□□□ 0.41
CLN3-209ENST00000561689 GALNT14Q96FL9 552 aa17.61■□□□□ 0.41
CLN3-209ENST00000561689 C19orf12Q9NSK7 152 aa17.61■□□□□ 0.41
CLN3-209ENST00000561689 RNF150Q9ULK6 438 aa17.61■□□□□ 0.41
CLN3-209ENST00000561689 TANC2Q9HCD6 1990 aa17.61■□□□□ 0.41
CLN3-209ENST00000561689 A0A0B4J2A0 478 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 C13orf42A0A1B0GVH6 325 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 DVL1O14640 695 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 PHF1O43189 567 aaPredicted RBP17.6■□□□□ 0.41
CLN3-209ENST00000561689 C17orf58Q2M2W7 97 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 LRRC10Q5BKY1 277 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 TP53RKQ96S44 253 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 PDCD10Q9BUL8 212 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 GNG12Q9UBI6 72 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 SHPKQ9UHJ6 478 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 C3orf85A0A1B0GTC6 90 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 KBTBD11-OT1A0A1B0GTJ5 212 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 NDUFA2O43678 99 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 PGLYRP1O75594 196 aaPredicted RBP17.6■□□□□ 0.41
CLN3-209ENST00000561689 IGHV2-70P01814 119 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms