RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 OR2D2Q9H210 308 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 MYOZ1Q9NP98 299 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 ASCL3Q9NQ33 180 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 KCNIP1Q9NZI2 227 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 ZDHHC8Q9ULC8 765 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 HSF4Q9ULV5 492 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 COL5A1P20908 1838 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 KIR2DS1A0A191URI9 304 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 A8MXK9 166 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 J3QT63 122 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 SH2D1BO14796 132 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 MLNRO43193 412 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 PTBP3O95758 552 aaKnown RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 TMEM50AO95807 157 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 HEXAP06865 529 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 ADCYAP1P18509 176 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 PVALBP20472 110 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 KIR2DS4P43632 304 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 CCL8P80075 99 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 EWSR1Q01844 656 aaKnown RBP eCLIP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 COL10A1Q03692 680 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 KIR2DS1Q14954 304 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 Q3ZCU0 254 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 PRR30Q53SZ7 412 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 GPR157Q5UAW9 335 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 RTL6Q6ICC9 239 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 DUX4L9Q6RFH8 374 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 DHRS11Q6UWP2 260 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 COLCA1Q6ZS62 124 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 S100PBPQ96BU1 408 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 SNRNP40Q96DI7 357 aaKnown RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 SDSLQ96GA7 329 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 GMPPAQ96IJ6 420 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 LINC00470Q9BZP3 86 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 RNF122Q9H9V4 155 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 ZNRD1Q9P1U0 126 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 MLXQ9UH92 298 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 MYO18BQ8IUG5 2567 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 DOPEY2Q9Y3R5 2298 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 ZFP92A6NM28 416 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 RAMP3O60896 148 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 TSPAN9O75954 239 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 CD55P08174 381 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 SNRPCP09234 159 aaKnown RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 SFTA3P0C7M3 94 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 ATP6V0CP27449 155 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 S100GP29377 79 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 GNG10P50151 68 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 OR2B8PP59922 312 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 PJVKQ0ZLH3 352 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 MSMPQ1L6U9 139 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 UTF1Q5T230 341 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 HSD17B13Q7Z5P4 300 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 RXFP4Q8TDU9 374 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 OR51I2Q9H344 312 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 UQCC1Q9NVA1 299 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 LPAR3Q9UBY5 353 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 PURGQ9UJV8 347 aaKnown RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 ATP23Q9Y6H3 246 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 FAM157CP0CG43 387 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 HLA-GP17693 338 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 DLX1P56177 255 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 ZNF345Q14585 488 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 MST1LQ2TV78 715 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 ZNF718Q3SXZ3 478 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 EIF5AL1Q6IS14 154 aaKnown RBP4.72□□□□□ -1.65
LIMA1-215ENST00000552823 LILRB2Q8N423 598 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 TMEM252Q8N6L7 170 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 DMBX1Q8NFW5 382 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 LILRB1Q8NHL6 650 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-215ENST00000552823 SPSB4Q96A44 273 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 TMEM222Q9H0R3 208 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 PIGMQ9H3S5 423 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 BARX1Q9HBU1 254 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-215ENST00000552823 CLN8Q9UBY8 286 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 PRELID1Q9Y255 219 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 OR2W1Q9Y3N9 320 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 MPC1Q9Y5U8 109 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 LRBAP50851 2863 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 SETD2Q9BYW2 2564 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-215ENST00000552823 OR5B21A6NL26 309 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 CYB5R3P00387 301 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-215ENST00000552823 CST4P01036 141 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 EGR1P18146 543 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 MDKP21741 143 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-215ENST00000552823 HLA-DRB3P79483 266 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 ZNF273Q14593 569 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 TESK1Q15569 626 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 Q6ZR03 302 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 BHLHA15Q7RTS1 189 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-215ENST00000552823 SPAG16Q8N0X2 631 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 WDR31Q8NA23 367 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 OR13A1Q8NGR1 328 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 TMEM171Q8WVE6 324 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 MUCL1Q96DR8 90 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 ABHD17AQ96GS6 310 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 AQP10Q96PS8 301 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 PLK3Q9H4B4 646 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 ZDHHC11Q9H8X9 412 aa4.72□□□□□ -1.65
LIMA1-215ENST00000552823 GLRX2Q9NS18 164 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms