RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 C1orf174Q8IYL3 243 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 FAM185AQ8N0U4 392 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 RND1Q92730 232 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 DUX4Q9UBX2 424 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 A0A1B0GWJ7 208 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 SRRM5B3KS81 715 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 CYB5R3P00387 301 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-216ENST00000541410 IGHV1-46P01743 117 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 HEXAP06865 529 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 RPL12P30050 165 aaKnown RBP12.16□□□□□ -0.46
CLIP1-216ENST00000541410 IL2RGP31785 369 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 ASCL1P50553 236 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 CCL8P80075 99 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 TMED6Q8WW62 240 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 GALMQ96C23 342 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 WFIKKN1Q96NZ8 548 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 AQP10Q96PS8 301 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 AUP1Q9Y679 476 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 ABCA4P78363 2273 aa12.16□□□□□ -0.46
CLIP1-216ENST00000541410 F2RP25116 425 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 PPP1CCP36873 323 aaKnown RBP12.15□□□□□ -0.46
CLIP1-216ENST00000541410 RND3P61587 244 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 TNFAIP6P98066 277 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-216ENST00000541410 AANATQ16613 207 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 ZNF808Q8N4W9 903 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-216ENST00000541410 ZDHHC8Q9ULC8 765 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 DOCK11Q5JSL3 2073 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 A0A0G2JRQ6 117 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 CDS2O95674 445 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 SELENOVP59797 346 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 RBPJQ06330 500 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 OR2B11Q5JQS5 317 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 CXorf66Q5JRM2 361 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-216ENST00000541410 RPL7L1Q6DKI1 246 aaKnown RBP12.15□□□□□ -0.46
CLIP1-216ENST00000541410 SLC35E4Q6ICL7 350 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 PDZD9Q8IXQ8 264 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 BVESQ8NE79 360 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 ERGIC1Q969X5 290 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 ELOVL5Q9NYP7 299 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 RCL1Q9Y2P8 373 aaKnown RBP12.15□□□□□ -0.46
CLIP1-216ENST00000541410 TMED3Q9Y3Q3 217 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 LRBAP50851 2863 aa12.15□□□□□ -0.46
CLIP1-216ENST00000541410 B8ZZF3 427 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 OMGP23515 440 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 UCP1P25874 307 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 LINC00205P59089 165 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 POLR2GP62487 172 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLIP1-216ENST00000541410 MZT1Q08AG7 82 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 C3orf36Q3SXR2 165 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 NEUROG1Q92886 237 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 ARL11Q969Q4 196 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 TMEM56Q96MV1 263 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 GCM1Q9NP62 436 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 SDHAF2Q9NX18 166 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 JKAMPQ9P055 326 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 TMEM56-RWDD3S4R434 201 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 OOEPA6NGQ2 149 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 LGALS8O00214 317 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 ZNF737O75373 536 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 OR4A8P0C604 315 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 EDDM3BP56851 147 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 RPS23P62266 143 aaKnown RBP12.14□□□□□ -0.47
CLIP1-216ENST00000541410 BTNL3Q6UXE8 466 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 DRAM1Q8N682 238 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 PRR7Q8TB68 274 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 RBPMSQ93062 196 aaKnown RBP12.14□□□□□ -0.47
CLIP1-216ENST00000541410 OR2D2Q9H210 308 aa12.14□□□□□ -0.47
CLIP1-216ENST00000541410 FAM90A27PA6NNH2 459 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 GRNP28799 593 aaKnown RBP12.13□□□□□ -0.47
CLIP1-216ENST00000541410 TMEM33P57088 247 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 ADIPOQQ15848 244 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 BAP18Q8IXM2 172 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 OR4D5Q8NGN0 318 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 REG4Q9BYZ8 158 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 FBXL17Q9UF56 701 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 DSCAML1Q8TD84 2053 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 PIEZO1Q92508 2521 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 NPIPB11E5RHQ5 1161 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 H0Y980 276 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 IFNL4K9M1U5 179 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 ST8SIA3O43173 380 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 SSSCA1O60232 199 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 SERPINE2P07093 398 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 TPT1P13693 172 aaKnown RBP12.13□□□□□ -0.47
CLIP1-216ENST00000541410 PTAFRP25105 342 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 UCNP55089 124 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 NHLH2Q02577 135 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 FGFRL1Q8N441 504 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 DMBX1Q8NFW5 382 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 C5orf30Q96GV9 206 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 ABHD14BQ96IU4 210 aa12.13□□□□□ -0.47
CLIP1-216ENST00000541410 ARFGEF3Q5TH69 2177 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 DLL1O00548 723 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 FBXO24O75426 580 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 IGKV1-39P01597 117 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 IGKV1D-39P04432 117 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 S100GP29377 79 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 SRPXP78539 464 aa12.12□□□□□ -0.47
CLIP1-216ENST00000541410 RNASE11Q8TAA1 199 aaKnown RBP12.12□□□□□ -0.47
CLIP1-216ENST00000541410 SPTBN1Q01082 2364 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms