RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 A0A1W2PPE2 198 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 A0A1W2PR64 198 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 A0A1W2PRV1 198 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 C9orf118A6NHY6 69 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 ZNF729A6NN14 1252 aaPredicted RBP6.09□□□□□ -1.43
CD44-228ENST00000528455 CENPXA8MT69 81 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 A8MXK9 166 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 ZNF736B4DX44 427 aaPredicted RBP6.09□□□□□ -1.43
CD44-228ENST00000528455 NPIPB11E5RHQ5 1161 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 LANCL1O43813 399 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 FCN3O75636 299 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 OR3A3P47888 321 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 INPP1P49441 399 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 EDDM3BP56851 147 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 TAS2R46P59540 309 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 TAS2R19P59542 299 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 HTD2P86397 168 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 ATXN7L3Q14CW9 347 aaPredicted RBP6.09□□□□□ -1.43
CD44-228ENST00000528455 KRTAP21-3Q3LHN1 58 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 LY6G6FQ5SQ64 297 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 C6orf183Q5T699 404 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 Q71RC1 249 aaPredicted RBP6.09□□□□□ -1.43
CD44-228ENST00000528455 MOB1BQ7L9L4 216 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 OVCH2Q7RTZ1 564 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 RTN4RL2Q86UN3 420 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 CIARTQ8N365 385 aaPredicted RBP6.09□□□□□ -1.43
CD44-228ENST00000528455 GVQW1Q8N7I0 195 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 SYT8Q8NBV8 401 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 CLRN3Q8NCR9 226 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 OR52M1Q8NGK5 317 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 OR4A4PQ8NGN8 299 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 OR4K15Q8NH41 348 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 NUDCD2Q8WVJ2 157 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 GIMAP1Q8WWP7 306 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 GALMQ96C23 342 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 C7orf50Q9BRJ6 194 aaKnown RBP6.09□□□□□ -1.43
CD44-228ENST00000528455 HDHD3Q9BSH5 251 aaPredicted RBP6.09□□□□□ -1.43
CD44-228ENST00000528455 SSBP3Q9BWW4 388 aaPredicted RBP6.09□□□□□ -1.43
CD44-228ENST00000528455 TAF9BQ9HBM6 251 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 ZNF286AQ9HBT8 521 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 IFT46Q9NQC8 304 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 ZNF230Q9UIE0 474 aaPredicted RBP6.09□□□□□ -1.43
CD44-228ENST00000528455 ANXA10Q9UJ72 324 aa6.09□□□□□ -1.43
CD44-228ENST00000528455 RPUSD1Q9UJJ7 312 aaKnown RBP6.09□□□□□ -1.43
CD44-228ENST00000528455 IGHV4-61A0A0C4DH41 118 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 A0A1B0GW55 424 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 NAP1L6A6NFF2 107 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 C17orf98A8MV24 154 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 C15orf65H3BRN8 121 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 J3QRK9 145 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 F2RL2O00254 374 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 PLA2G10O15496 165 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 SPINT2O43291 252 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 LY6G6DO95868 133 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 RBP4P02753 201 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 CD74P04233 296 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 SCTP09683 121 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 GSTT2P0CG29 244 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 DUX4L2P0CJ85 424 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 DUX4L3P0CJ86 424 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 DUX4L4P0CJ87 422 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 DUX4L5P0CJ88 424 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 DUX4L6P0CJ89 424 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 DUX4L7P0CJ90 424 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 AKAIN1P0CW23 69 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 ZNF728P0DKX0 622 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 PPIAL4GP0DN37 164 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 SELLP14151 372 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 FAUP35544 74 aaKnown RBP6.08□□□□□ -1.44
CD44-228ENST00000528455 GLP1RP43220 463 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 PAX2Q02962 417 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 MADCAM1Q13477 382 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 DCTN2Q13561 401 aaKnown RBP6.08□□□□□ -1.44
CD44-228ENST00000528455 KLF9Q13886 244 aaPredicted RBP6.08□□□□□ -1.44
CD44-228ENST00000528455 EDDM3AQ14507 147 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 MEF2DQ14814 521 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 TMEM30BQ3MIR4 351 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 CHRFAM7AQ494W8 412 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 ACTBL2Q562R1 376 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 VAX1Q5SQQ9 334 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 TRIQKQ629K1 86 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 STEAP1BQ6NZ63 245 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 C16orf87Q6PH81 154 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 DUX4L9Q6RFH8 374 aaPredicted RBP6.08□□□□□ -1.44
CD44-228ENST00000528455 TMEM17Q86X19 198 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 OR6F1Q8NGZ6 308 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 SETD6Q8TBK2 473 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 CCDC107Q8WV48 283 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 ZFAND2BQ8WV99 257 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 H1FXQ92522 213 aaKnown RBP6.08□□□□□ -1.44
CD44-228ENST00000528455 TRIM63Q969Q1 353 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 ARL11Q969Q4 196 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 REG4Q9BYZ8 158 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 TOLLIPQ9H0E2 274 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 GAL3ST2Q9H3Q3 398 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 ABCB10Q9NRK6 738 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 NECAP2Q9NVZ3 263 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 DUX4Q9UBX2 424 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 SLC23A1Q9UHI7 598 aa6.08□□□□□ -1.44
CD44-228ENST00000528455 TLN2Q9Y4G6 2542 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms