RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 A0A0B4J2E0 115 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 IGHV2-70DA0A0C4DH43 119 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 A0A1B0GVT2 93 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 A0A1B0GX12 115 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 H7BYZ3 331 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 PITX3O75364 302 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 MTX2O75431 263 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 PCCBP05166 539 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 IFI6P09912 130 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 OR5G3P0C626 314 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 ZNF43P17038 809 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 PTGER1P34995 402 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 APOBEC1P41238 236 aaKnown RBP4.67□□□□□ -1.66
CLK1-202ENST00000409403 ENDOGQ14249 297 aaKnown RBP4.67□□□□□ -1.66
CLK1-202ENST00000409403 GNMTQ14749 295 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 CEBPEQ15744 281 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 ANKRD55Q3KP44 614 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 ACSF3Q4G176 576 aaPredicted RBP4.67□□□□□ -1.66
CLK1-202ENST00000409403 TXNDC8Q6A555 127 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 SLC18B1Q6NT16 456 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 MFSD12Q6NUT3 480 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 TOMM20LQ6UXN7 152 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 HMGN2P46Q86SG4 172 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 MYPOPQ86VE0 399 aaPredicted RBP4.67□□□□□ -1.66
CLK1-202ENST00000409403 AMZ2Q86W34 360 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 CATSPERDQ86XM0 798 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 WDFY1Q8IWB7 410 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 CHST4Q8NCG5 386 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 OR2G3Q8NGZ4 309 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 TSLPQ969D9 159 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 TMEM230Q96A57 120 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 DDIT4LQ96D03 193 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 ZG16BQ96DA0 208 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 PERPQ96FX8 193 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 LRRC3BQ96PB8 259 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 ALKBH3Q96Q83 286 aaPredicted RBP4.67□□□□□ -1.66
CLK1-202ENST00000409403 TNFRSF13CQ96RJ3 184 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 NKX3-1Q99801 234 aaPredicted RBP4.67□□□□□ -1.66
CLK1-202ENST00000409403 RARRES2Q99969 163 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 QTRT1Q9BXR0 403 aaKnown RBP4.67□□□□□ -1.66
CLK1-202ENST00000409403 SMIM3Q9BZL3 60 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 C5orf66Q9H5L9 145 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 SDF2L1Q9HCN8 221 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 HCFC1R1Q9NWW0 138 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 BET1LQ9NYM9 111 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 CISD1Q9NZ45 108 aaKnown RBP4.67□□□□□ -1.66
CLK1-202ENST00000409403 FLRT3Q9NZU0 649 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 NAT8Q9UHE5 227 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 WIPI2Q9Y4P8 454 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 LSM5Q9Y4Y9 91 aaKnown RBP4.67□□□□□ -1.66
CLK1-202ENST00000409403 LIPGQ9Y5X9 500 aa4.67□□□□□ -1.66
CLK1-202ENST00000409403 TMEM131Q92545 1883 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 A0A0G2JN53 185 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 ZNF732B4DXR9 585 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 CCL25O15444 150 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 SLC25A17O43808 307 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 TBL1XO60907 577 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 RBMXL2O75526 392 aaKnown RBP4.66□□□□□ -1.66
CLK1-202ENST00000409403 NTN1O95631 604 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 RENP00797 406 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 HRASP01112 189 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 SELEP16581 610 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 IGFBP3P17936 291 aaPredicted RBP4.66□□□□□ -1.66
CLK1-202ENST00000409403 KLK2P20151 261 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 HSD11B1P28845 292 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 CEACAM8P31997 349 aaPredicted RBP4.66□□□□□ -1.66
CLK1-202ENST00000409403 WNT5AP41221 380 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 GPR12P47775 334 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 BTN3A2P78410 334 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 BAXQ07812 192 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 SLC17A1Q14916 467 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 RNPS1Q15287 305 aaKnown RBP4.66□□□□□ -1.66
CLK1-202ENST00000409403 CCSMST1Q4G0I0 132 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 PIK3CD-AS1Q5SR53 167 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 MRPL2Q5T653 305 aaKnown RBP4.66□□□□□ -1.66
CLK1-202ENST00000409403 SLC48A1Q6P1K1 146 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 KCTD18Q6PI47 426 aaPredicted RBP4.66□□□□□ -1.66
CLK1-202ENST00000409403 OLIG3Q7RTU3 272 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 ZNF550Q7Z398 422 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 TBC1D26Q86UD7 250 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 COMMD2Q86X83 199 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 TMEM156Q8N614 296 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 OR5L1Q8NGL2 311 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 OR5B3Q8NH48 314 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 OR2V1Q8NHB1 315 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 CLDND2Q8NHS1 167 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 FAM216AQ8WUB2 273 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 RPUSD4Q96CM3 377 aaKnown RBP4.66□□□□□ -1.66
CLK1-202ENST00000409403 OR8B4Q96RC9 309 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 PARP12Q9H0J9 701 aaKnown RBP4.66□□□□□ -1.66
CLK1-202ENST00000409403 SLC2A9Q9NRM0 540 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 ZNF701Q9NV72 531 aaPredicted RBP4.66□□□□□ -1.66
CLK1-202ENST00000409403 SOHLH2Q9NX45 425 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 C5AR2Q9P296 337 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 HHLA2Q9UM44 414 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 FUT9Q9Y231 359 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 ST3GAL6Q9Y274 331 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 RBM7Q9Y580 266 aaKnown RBP4.66□□□□□ -1.66
CLK1-202ENST00000409403 OR51B4Q9Y5P0 310 aa4.66□□□□□ -1.66
CLK1-202ENST00000409403 COLEC10Q9Y6Z7 277 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms