RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 C8orf44Q96CB5 159 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 OR2A7Q96R45 310 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 CHAC1Q9BUX1 264 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 LHX5Q9H2C1 402 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 TNFRSF18Q9Y5U5 241 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 CASZ1Q86V15 1759 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 IGHV1-45A0A0A0MS14 117 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 BLACEA4D250 179 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 NDUFC2-KCTD14E9PQ53 114 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 SPRY1O43609 319 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 TSPAN7P41732 249 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 TMEM78Q5T7P6 136 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 RNF182Q8N6D2 247 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 NRG4Q8WWG1 115 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 LPAR2Q9HBW0 351 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 PRDM6Q9NQX0 595 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 LMTK3Q96Q04 1460 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 PAX4O43316 350 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 TNFSF14O43557 240 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 PTP4A2Q12974 167 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 RGNQ15493 299 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 SERTAD4-AS1Q5TG53 156 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 C20orf196Q8IYI0 205 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 TSACCQ96A04 125 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 ADOQ96SZ5 270 aa6.72□□□□□ -1.33
LIMCH1-201ENST00000313860 TRGV10A0A0A0MS01 117 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 A0A1W2PS18 150 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 PLA2G1BP04054 148 aaKnown RBP6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 IHHQ14623 411 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 ECSCRQ19T08 205 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 IBA57Q5T440 356 aaKnown RBP6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 LHFPL2Q6ZUX7 228 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 KLHDC7BQ96G42 594 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 CISD1Q9NZ45 108 aaKnown RBP6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 MUC21A0A0G2JKD1 596 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 MUC21A0A140T8X8 626 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 C3orf85A0A1B0GTC6 90 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 ANKRD20A5PA0PJZ0 165 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 TMEM30CPA0ZSE6 113 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 SHISA7A6NL88 538 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 ATP4BP51164 291 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 GAS1P54826 345 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 SERF2P84101 59 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 CEACAM7Q14002 265 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 MUC21Q5SSG8 566 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 ZNF818PQ6ZRF7 136 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 LINC00116Q8NCU8 138 aa6.71□□□□□ -1.33
LIMCH1-201ENST00000313860 HSPB2A8KAH6 182 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 K7N7A8 449 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 HTR6P50406 440 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 HSPB2Q16082 182 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 C3AR1Q16581 482 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 C12orf76Q8N812 135 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 C3orf56Q8N813 242 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 LYPD6BQ8NI32 183 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 CT55Q8WUE5 264 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 NCOR1P1Q9H4R4 102 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 SIGLEC1Q9BZZ2 1709 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 USP6P35125 1406 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 NPIPB13A6NJU9 1138 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 NPIPB5A8MRT5 1133 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 NPIPB4C9JG80 1138 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 LEPP41159 167 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 FOXB2Q5VYV0 432 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 Q6ZVU0 165 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 SERINC5Q86VE9 423 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 PUSL1Q8N0Z8 303 aaKnown RBP6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 TMEM86BQ8N661 226 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 NPIPB3Q92617 1050 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 KAZALD1Q96I82 304 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 TXNDC17Q9BRA2 123 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 TRAV30A0A087WSZ9 112 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 SOD1P00441 154 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 SCG5P05408 212 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 SELENOWP63302 87 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 ORMDL2Q53FV1 153 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 PHF13Q86YI8 300 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 LINC00518Q8N0U6 118 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 OR11H6Q8NGC7 330 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 OR8B12Q8NGG6 310 aa6.71□□□□□ -1.34
LIMCH1-201ENST00000313860 FAM90A18PA6NE21 464 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 FAM90A16PA6NEW6 464 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 FAM90A9PA6NNJ1 464 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 FAM90A5PA8MXJ8 464 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 LEUTXA8MZ59 168 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 MLNRO43193 412 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 CA12O43570 354 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 SYNGR3O43761 229 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 NTN1O95631 604 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 FAM90A15PP0C7V4 464 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 FAM90A14PP0C7W9 464 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 PCLAFQ15004 111 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 MBLAC2Q68D91 279 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 LYPD8Q6UX82 237 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 ST6GAL2Q96JF0 529 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 OR2A14Q96R47 310 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 GHITMQ9H3K2 345 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 RPRMQ9NS64 109 aa6.7□□□□□ -1.34
LIMCH1-201ENST00000313860 DAPP1Q9UN19 280 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms