RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PDCD6O75340 191 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 ZGLP1P0C6A0 271 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 PAFAH1B2P68402 229 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 MBD3L1Q8WWY6 194 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 C7orf66A4D0T2 115 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 NDUFB3O43676 98 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 NGFP01138 241 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 BCL2P10415 239 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 MNX1P50219 401 aaPredicted RBP8.68□□□□□ -1.02
COL6A3-201ENST00000295550 RELBQ01201 579 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 FMODQ06828 376 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 CEACAM16Q2WEN9 425 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 DEGS2Q6QHC5 323 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 SLC36A1Q7Z2H8 476 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 ADTRPQ96IZ2 230 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 SAP30LQ9HAJ7 183 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 PRKNO60260 465 aaPredicted RBP8.68□□□□□ -1.02
COL6A3-201ENST00000295550 PDCD1Q15116 288 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 SLC25A33Q9BSK2 321 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 THYN1Q9P016 225 aa8.68□□□□□ -1.02
COL6A3-201ENST00000295550 BTF3P20290 206 aaKnown RBP8.67□□□□□ -1.02
COL6A3-201ENST00000295550 GVQW1Q8N7I0 195 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 OR4P4Q8NGL7 312 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 FNDC1Q4ZHG4 1894 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-201ENST00000295550 OOEPA6NGQ2 149 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 GREM1O60565 184 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 ZNF774Q6NX45 483 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 PRSS41Q7RTY9 318 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 OVCH2Q7RTZ1 564 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 M0R296 226 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 LAIR2Q6ISS4 152 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 OR5R1Q8NH85 324 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 RASL11BQ9BPW5 248 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 PARP11Q9NR21 331 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 TNRC6AQ8NDV7 1962 aaKnown RBP8.67□□□□□ -1.02
COL6A3-201ENST00000295550 A0A1W2PR80 420 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 F12P00748 615 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-201ENST00000295550 POLR2GP62487 172 aaKnown RBP eCLIP8.67□□□□□ -1.02
COL6A3-201ENST00000295550 SKP2Q13309 424 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 TMEM91Q6ZNR0 172 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 OR1K1Q8NGR3 316 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 OR51M1Q9H341 326 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 NCOA6Q14686 2063 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-201ENST00000295550 PWWP2BQ6NUJ5 590 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 VSIG4Q9Y279 399 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.67□□□□□ -1.02
COL6A3-201ENST00000295550 MFAP2P55001 183 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 Q5PR19 223 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 SGMS2Q8NHU3 365 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 H3BMH7 237 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 PLPP3O14495 311 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 ATG4DQ86TL0 474 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-201ENST00000295550 LRRC3BQ96PB8 259 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 J3KRW8 73 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 NPBWR2P48146 333 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 TMEM204Q9BSN7 226 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 LYZL6O75951 148 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 CTSDP07339 412 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-201ENST00000295550 CT62P0C5K7 136 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 MMP9P14780 707 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 MRGPRDQ8TDS7 321 aa8.67□□□□□ -1.02
COL6A3-201ENST00000295550 IGHV3-43A0A0B4J1X8 118 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 CDK2AP1O14519 115 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 ADAP1O75689 374 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 IGHV3-43DP0DP04 118 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 SLC25A42Q86VD7 318 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 GCM2O75603 506 aaPredicted RBP8.66□□□□□ -1.02
COL6A3-201ENST00000295550 SURF2Q15527 256 aaPredicted RBP8.66□□□□□ -1.02
COL6A3-201ENST00000295550 ASB10Q8WXI3 467 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 HOXA4Q00056 320 aaPredicted RBP8.66□□□□□ -1.02
COL6A3-201ENST00000295550 R3HDM4Q96D70 268 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 PTPRQQ9UMZ3 2332 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 SLC35B1P78383 322 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 FAM181AQ8N9Y4 354 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 OR2V1Q8NHB1 315 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 CHST1O43916 411 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 KLF3P57682 345 aaPredicted RBP8.66□□□□□ -1.02
COL6A3-201ENST00000295550 TCTN1Q2MV58 587 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 C19orf54Q5BKX5 351 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 RFESDQ8TAC1 157 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 ELF5Q9UKW6 265 aaPredicted RBP8.66□□□□□ -1.02
COL6A3-201ENST00000295550 CTXND1A0A1B0GTU2 59 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 A0A1W2PQD3 144 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 JOSD1Q15040 202 aaPredicted RBP8.66□□□□□ -1.02
COL6A3-201ENST00000295550 PRNTQ86SH4 94 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 PPP1R3EQ9H7J1 279 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 SRFP11831 508 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 MESTQ5EB52 335 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 CD200R1LQ6Q8B3 271 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 OR4D9Q8NGE8 314 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 FRRS1LQ9P0K9 344 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 SIT1Q9Y3P8 196 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 CTLA4P16410 223 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 DSCR4P56555 118 aaPredicted RBP8.66□□□□□ -1.02
COL6A3-201ENST00000295550 LDLRAD3Q86YD5 345 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 PTX4Q96A99 478 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 PCOLCE2Q9UKZ9 415 aa8.66□□□□□ -1.02
COL6A3-201ENST00000295550 RNPS1Q15287 305 aaKnown RBP8.65□□□□□ -1.02
COL6A3-201ENST00000295550 PLPPR5Q32ZL2 321 aa8.65□□□□□ -1.02
COL6A3-201ENST00000295550 REC114Q7Z4M0 266 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms