RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PPP1CCP36873 323 aaKnown RBP16.93■□□□□ 0.3
VPS53-201ENST00000291074 PAX9P55771 341 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 AKIRIN2Q53H80 203 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 ETV3LQ6ZN32 361 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 MOB1BQ7L9L4 216 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 TREM2Q9NZC2 230 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 RNF115Q9Y4L5 304 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 CHD3Q12873 2000 aaKnown RBP16.93■□□□□ 0.3
VPS53-201ENST00000291074 WDR1O75083 606 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 GUK1Q16774 197 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 PRAMEF6Q5VXH4 476 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 RNASE11Q8TAA1 199 aaKnown RBP16.93■□□□□ 0.3
VPS53-201ENST00000291074 TAAR6Q96RI8 345 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 SLC25A31Q9H0C2 315 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 ZNF292O60281 2723 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 K7N7A8 449 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 CECR9P0C854 216 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 HFEQ30201 348 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 C11orf53Q8IXP5 236 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 ZNF295-AS1Q8N0V1 137 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 ABHD14BQ96IU4 210 aa16.93■□□□□ 0.3
VPS53-201ENST00000291074 OPN3Q9H1Y3 402 aaPredicted RBP16.93■□□□□ 0.3
VPS53-201ENST00000291074 MGAQ8IWI9 3026 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 CEACAM6P40199 344 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 RPL35P42766 123 aaKnown RBP16.92■□□□□ 0.3
VPS53-201ENST00000291074 FABP6P51161 128 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 RUNX1Q01196 453 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 ZNF266Q14584 549 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 ACSF3Q4G176 576 aaPredicted RBP16.92■□□□□ 0.3
VPS53-201ENST00000291074 OR2G3Q8NGZ4 309 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 SARAFQ96BY9 339 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 MSL2Q9HCI7 577 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 MBNL3Q9NUK0 354 aaKnown RBP16.92■□□□□ 0.3
VPS53-201ENST00000291074 UFSP2Q9NUQ7 469 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 A6NLC8 198 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 PRR33A8MZF0 331 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 AKR1D1P51857 326 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 OR8G5Q8NG78 346 aa16.92■□□□□ 0.3
VPS53-201ENST00000291074 EIF5A2Q9GZV4 153 aaKnown RBP16.92■□□□□ 0.3
VPS53-201ENST00000291074 HMGN3Q15651 99 aa16.91■□□□□ 0.3
VPS53-201ENST00000291074 Q6ZR03 302 aa16.91■□□□□ 0.3
VPS53-201ENST00000291074 ZNF610Q8N9Z0 462 aa16.91■□□□□ 0.3
VPS53-201ENST00000291074 ZMAT5Q9UDW3 170 aaKnown RBP16.91■□□□□ 0.3
VPS53-201ENST00000291074 CACNG5Q9UF02 275 aa16.91■□□□□ 0.3
VPS53-201ENST00000291074 STRAPQ9Y3F4 350 aaKnown RBP16.91■□□□□ 0.3
VPS53-201ENST00000291074 USF3Q68DE3 2245 aa16.91■□□□□ 0.3
VPS53-201ENST00000291074 MEX3AA1L020 520 aaKnown RBP16.91■□□□□ 0.3
VPS53-201ENST00000291074 TMEM210A6NLX4 147 aa16.91■□□□□ 0.3
VPS53-201ENST00000291074 CNOT4O95628 575 aaKnown RBP16.91■□□□□ 0.3
VPS53-201ENST00000291074 AKR1C3P42330 323 aa16.91■□□□□ 0.3
VPS53-201ENST00000291074 OR1L1Q8NH94 360 aa16.91■□□□□ 0.3
VPS53-201ENST00000291074 HES4Q9HCC6 221 aa16.91■□□□□ 0.3
VPS53-201ENST00000291074 WIPI2Q9Y4P8 454 aa16.91■□□□□ 0.3
VPS53-201ENST00000291074 KIAA1324LA8MWY0 1029 aaPredicted RBP16.9■□□□□ 0.3
VPS53-201ENST00000291074 GPR37O15354 613 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 TIMM8AO60220 97 aaPredicted RBP16.9■□□□□ 0.3
VPS53-201ENST00000291074 IGKV1-5P01602 117 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 RAB5CP51148 216 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 TMEM267Q0VDI3 215 aaPredicted RBP16.9■□□□□ 0.3
VPS53-201ENST00000291074 DKK4Q9UBT3 224 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 FBXO7Q9Y3I1 522 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 AKAP13Q12802 2813 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 RIF1Q5UIP0 2472 aaKnown RBP16.9■□□□□ 0.3
VPS53-201ENST00000291074 ZNF98A6NK75 572 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 HEXAP06865 529 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 H2AFB1P0C5Y9 115 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 LMO1P25800 156 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 AESQ08117 197 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 ZNF585BQ52M93 769 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 DRAM1Q8N682 238 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 CADP27708 2225 aa16.9■□□□□ 0.3
VPS53-201ENST00000291074 TNFSF13O75888 250 aa16.89■□□□□ 0.29
VPS53-201ENST00000291074 OR3A1P47881 315 aa16.89■□□□□ 0.29
VPS53-201ENST00000291074 ALKBH2Q6NS38 261 aa16.89■□□□□ 0.29
VPS53-201ENST00000291074 RNF150Q9ULK6 438 aa16.89■□□□□ 0.29
VPS53-201ENST00000291074 NDRG3Q9UGV2 375 aa16.89■□□□□ 0.29
VPS53-201ENST00000291074 METRNQ9UJH8 293 aa16.89■□□□□ 0.29
VPS53-201ENST00000291074 A0A1B0GU03 582 aa16.88■□□□□ 0.29
VPS53-201ENST00000291074 CCL20P78556 96 aa16.88■□□□□ 0.29
VPS53-201ENST00000291074 BCL2L14Q9BZR8 327 aa16.88■□□□□ 0.29
VPS53-201ENST00000291074 C12orf77C9JDV5 145 aa16.88■□□□□ 0.29
VPS53-201ENST00000291074 IAPPP10997 89 aa16.88■□□□□ 0.29
VPS53-201ENST00000291074 MMP9P14780 707 aa16.88■□□□□ 0.29
VPS53-201ENST00000291074 WDR82Q6UXN9 313 aa16.88■□□□□ 0.29
VPS53-201ENST00000291074 TPRX1Q8N7U7 411 aa16.88■□□□□ 0.29
VPS53-201ENST00000291074 C1orf162Q8NEQ5 155 aaPredicted RBP16.88■□□□□ 0.29
VPS53-201ENST00000291074 STARD4Q96DR4 205 aa16.88■□□□□ 0.29
VPS53-201ENST00000291074 CXXC4Q9H2H0 198 aa16.88■□□□□ 0.29
VPS53-201ENST00000291074 IGHV1-18A0A0C4DH31 117 aa16.87■□□□□ 0.29
VPS53-201ENST00000291074 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.87■□□□□ 0.29
VPS53-201ENST00000291074 TMEM30CPA0ZSE6 113 aa16.87■□□□□ 0.29
VPS53-201ENST00000291074 H7C2Y5 167 aa16.87■□□□□ 0.29
VPS53-201ENST00000291074 PTBP3O95758 552 aaKnown RBP16.87■□□□□ 0.29
VPS53-201ENST00000291074 HOXB1P14653 301 aaPredicted RBP16.87■□□□□ 0.29
VPS53-201ENST00000291074 BAXQ07812 192 aa16.87■□□□□ 0.29
VPS53-201ENST00000291074 PEA15Q15121 130 aa16.87■□□□□ 0.29
VPS53-201ENST00000291074 FIP1L1Q6UN15 594 aaKnown RBP16.87■□□□□ 0.29
VPS53-201ENST00000291074 SEM1Q6ZVN7 128 aa16.87■□□□□ 0.29
VPS53-201ENST00000291074 COMMD1Q8N668 190 aa16.87■□□□□ 0.29
VPS53-201ENST00000291074 OR52L2PQ8NGH6 319 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms