RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 SRSF7Q16629 238 aaKnown RBP eCLIP12.3□□□□□ -0.449e-7■□□□□ 10.6
TRIM28-207ENST00000597136 HOGA1Q86XE5 327 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 Q8N7P7 452 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 SETD6Q8TBK2 473 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 TBX15Q96SF7 602 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 SIRPDQ9H106 197 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 MBNL3Q9NUK0 354 aaKnown RBP12.3□□□□□ -0.44
TRIM28-207ENST00000597136 ONECUT1Q9UBC0 465 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 SOX21Q9Y651 276 aaPredicted RBP12.3□□□□□ -0.44
TRIM28-207ENST00000597136 A0A1W2PQ09 198 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 FSHBP01225 129 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 LIPFP07098 398 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 IL7P13232 177 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 HNF1AP20823 631 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 RCVRNP35243 200 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 SRP14P37108 136 aaKnown RBP12.3□□□□□ -0.44
TRIM28-207ENST00000597136 ACTBP60709 375 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 ACTG1P63261 375 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 MEF2CQ06413 473 aaPredicted RBP12.3□□□□□ -0.44
TRIM28-207ENST00000597136 ZNF273Q14593 569 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 C11orf91Q3C1V1 193 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 Q6ZS49 121 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 MOB1BQ7L9L4 216 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 LYSMD2Q8IV50 215 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 FAM185AQ8N0U4 392 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 OR13A1Q8NGR1 328 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 SNAPC3Q92966 411 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 OR6C3Q9NZP0 311 aa12.3□□□□□ -0.44
TRIM28-207ENST00000597136 IGKV1D-8A0A087WSZ0 117 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 TRBV23-1A0A0A0MS06 115 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 UPK1BO75841 260 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 TOX4O94842 621 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 IGHV4-38-2P0DP08 117 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 CCL3L1P16619 93 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 SRD5A1P18405 259 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 TRIQKQ629K1 86 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 OR52W1Q6IF63 320 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 TCF23Q7RTU1 214 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 ZNF565Q8N9K5 539 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 BEST4Q8NFU0 473 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 MRGPRDQ8TDS7 321 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 CORO2AQ92828 525 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 BORCS5Q969J3 196 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 UPRTQ96BW1 309 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 LPAR3Q9UBY5 353 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 ZNF107Q9UII5 783 aaPredicted RBP12.29□□□□□ -0.44
TRIM28-207ENST00000597136 MGAT4AQ9UM21 535 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 LINC00312Q9Y6C7 94 aa12.29□□□□□ -0.44
TRIM28-207ENST00000597136 TRGV10A0A0A0MS01 117 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 hADV38S2A0JD32 116 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 ANKRD20A5PA0PJZ0 165 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 TRDCB7Z8K6 153 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 GSTT2BP0CG30 244 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 FAM157CP0CG43 387 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 CGB3P0DN86 165 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 CGB7P0DN87 165 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 GZMHP20718 246 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 GLP1RP43220 463 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 IFITM3Q01628 133 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 C6orf183Q5T699 404 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 C5orf24Q7Z6I8 188 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 PDZD9Q8IXQ8 264 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 C11orf42Q8N5U0 333 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 NANPQ8TBE9 248 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 C22orf15Q8WYQ4 148 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 ZNF286AQ9HBT8 521 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 SIRT7Q9NRC8 400 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 ABCB10Q9NRK6 738 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 TAS2R8Q9NYW2 309 aa12.28□□□□□ -0.44
TRIM28-207ENST00000597136 C12orf77C9JDV5 145 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 CSF1P09603 554 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 HLA-DMAP28067 261 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 HMGN3Q15651 99 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 METTL11BQ5VVY1 283 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 VMO1Q7Z5L0 202 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 ZNF554Q86TJ5 538 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 PRIMA1Q86XR5 153 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 BCL6BQ8N143 479 aaPredicted RBP12.27□□□□□ -0.44
TRIM28-207ENST00000597136 TOMM5Q8N4H5 51 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 TMEM229BQ8NBD8 167 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 TAF9BQ9HBM6 251 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 KCNIP1Q9NZI2 227 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 ANXA10Q9UJ72 324 aa12.27□□□□□ -0.44
TRIM28-207ENST00000597136 UBE2J1Q9Y385 318 aaPredicted RBP12.27□□□□□ -0.44
TRIM28-207ENST00000597136 TRAV40A0A0B4J280 105 aa12.26□□□□□ -0.45
TRIM28-207ENST00000597136 ZNF736B4DX44 427 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-207ENST00000597136 CD3DP04234 171 aa12.26□□□□□ -0.45
TRIM28-207ENST00000597136 SCTP09683 121 aa12.26□□□□□ -0.45
TRIM28-207ENST00000597136 GSTT2P0CG29 244 aa12.26□□□□□ -0.45
TRIM28-207ENST00000597136 KIR2DS4P43632 304 aa12.26□□□□□ -0.45
TRIM28-207ENST00000597136 DLX6P56179 175 aa12.26□□□□□ -0.45
TRIM28-207ENST00000597136 AP3S2P59780 193 aa12.26□□□□□ -0.45
TRIM28-207ENST00000597136 HLA-DRB3P79483 266 aa12.26□□□□□ -0.45
TRIM28-207ENST00000597136 KLF9Q13886 244 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-207ENST00000597136 KIR2DS1Q14954 304 aa12.26□□□□□ -0.45
TRIM28-207ENST00000597136 STEAP3Q658P3 488 aa12.26□□□□□ -0.45
TRIM28-207ENST00000597136 ZNF57Q68EA5 555 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-207ENST00000597136 C16orf87Q6PH81 154 aa12.26□□□□□ -0.45
TRIM28-207ENST00000597136 TRAT1Q6PIZ9 186 aa12.26□□□□□ -0.45
TRIM28-207ENST00000597136 LHX4Q969G2 390 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms