RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 SHISA7A6NL88 538 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 AQP7P3A6NL99 342 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 IGHV2-70P01814 119 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 EGR1P18146 543 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 BCL3P20749 454 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 FKBP2P26885 142 aaKnown RBP9.88□□□□□ -0.83
CLN3-238ENST00000569430 FOLR3P41439 243 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 NPBWR2P48146 333 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 CLDN15P56746 228 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 TAS2R60P59551 318 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 UBE2NP61088 152 aaKnown RBP9.88□□□□□ -0.83
CLN3-238ENST00000569430 PRDX4Q13162 271 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 RTP5Q14D33 572 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 WIPI1Q5MNZ9 446 aaPredicted RBP9.88□□□□□ -0.83
CLN3-238ENST00000569430 LHFPL1Q86WI0 220 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 MOB3AQ96BX8 217 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 RBKSQ9H477 322 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 LYRM2Q9NU23 88 aaPredicted RBP9.88□□□□□ -0.83
CLN3-238ENST00000569430 POLEQ07864 2286 aa9.88□□□□□ -0.83
CLN3-238ENST00000569430 STARD6P59095 220 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 CDPF1Q6NVV7 123 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.87□□□□□ -0.83
CLN3-238ENST00000569430 LIN7CQ9NUP9 197 aaKnown RBP9.87□□□□□ -0.83
CLN3-238ENST00000569430 HS3ST3B1Q9Y662 390 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 SPTBN2O15020 2390 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 RFESDQ8TAC1 157 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 NEIL1Q96FI4 390 aaPredicted RBP9.87□□□□□ -0.83
CLN3-238ENST00000569430 C14orf144Q96I85 54 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 B4GALT7Q9UBV7 327 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 PISDQ9UG56 409 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 CNOT1A5YKK6 2376 aaKnown RBP9.87□□□□□ -0.83
CLN3-238ENST00000569430 A0A0U1RQV5 110 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 KIAA1324LA8MWY0 1029 aaPredicted RBP9.87□□□□□ -0.83
CLN3-238ENST00000569430 CEACAM6P40199 344 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 HYAL1Q12794 435 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 TMEM211Q6ICI0 200 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 BORCS7Q96B45 105 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 MISP3Q96FF7 219 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 CTDSP1Q9GZU7 261 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 ZNF586Q9NXT0 402 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 PRRC2CQ9Y520 2896 aaKnown RBP9.87□□□□□ -0.83
CLN3-238ENST00000569430 LRRK1Q38SD2 2015 aa9.87□□□□□ -0.83
CLN3-238ENST00000569430 DUXBA0A1W2PPF3 345 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 K7N7A8 449 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 PIAS2O75928 621 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 C10orf91Q5T1B1 145 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 C5orf24Q7Z6I8 188 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 RABEPKQ7Z6M1 372 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 VN1R17PQ8TDU5 208 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 ZNF581Q9P0T4 197 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 FOXD3Q9UJU5 478 aaPredicted RBP9.86□□□□□ -0.83
CLN3-238ENST00000569430 FREM2Q5SZK8 3169 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 C11orf94C9JXX5 98 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 H0Y8G0 127 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 MT-CO2P00403 227 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 TPPP2P59282 170 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 QRFPP83859 136 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 MEF2BQ02080 365 aaPredicted RBP9.86□□□□□ -0.83
CLN3-238ENST00000569430 COL10A1Q03692 680 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 EIF3IQ13347 325 aaKnown RBP9.86□□□□□ -0.83
CLN3-238ENST00000569430 ICAM4Q14773 271 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 RAB30Q15771 203 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 ZNF818PQ6ZRF7 136 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 HIST3H2BBQ8N257 126 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 OR2M3Q8NG83 312 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 CMTM2Q8TAZ6 248 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 MARS2Q96GW9 593 aaKnown RBP9.86□□□□□ -0.83
CLN3-238ENST00000569430 NOL4LQ96MY1 436 aaPredicted RBP9.86□□□□□ -0.83
CLN3-238ENST00000569430 OBSL1O75147 1896 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 ZNF17P17021 662 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 CSRP1P21291 193 aaKnown RBP9.86□□□□□ -0.83
CLN3-238ENST00000569430 RBM11P57052 281 aaKnown RBP9.86□□□□□ -0.83
CLN3-238ENST00000569430 CD81P60033 236 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 COL19A1Q14993 1142 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 ZNF468Q5VIY5 522 aaPredicted RBP9.86□□□□□ -0.83
CLN3-238ENST00000569430 SELENOHQ8IZQ5 122 aaKnown RBP9.86□□□□□ -0.83
CLN3-238ENST00000569430 FAM58AQ8N1B3 248 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 OR10V1Q8NGI7 309 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 OR4A16Q8NH70 328 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 OR4C12Q96R67 309 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 PLA2G3Q9NZ20 509 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 FER1L5A0AVI2 2057 aa9.86□□□□□ -0.83
CLN3-238ENST00000569430 FAM166BA8MTA8 275 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 AQP7O14520 342 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 IGHMP01871 453 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 GYPAP02724 150 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 CELA2AP08217 269 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 SUMO1P63165 101 aaKnown RBP9.85□□□□□ -0.83
CLN3-238ENST00000569430 ZNF506Q5JVG8 444 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 PRAMEF5Q5TYX0 476 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 ABHD17BQ5VST6 288 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 PRAMEF6Q5VXH4 476 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 EDARADDQ8WWZ3 215 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 HIST1H2BLQ99880 126 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 MTCH1Q9NZJ7 389 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 GOLT1BQ9Y3E0 138 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 FCN1O00602 326 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 F2RP25116 425 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 TRIM61Q5EBN2 209 aa9.85□□□□□ -0.83
CLN3-238ENST00000569430 SSX7Q7RTT5 188 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms