RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 TNFAIP8L3Q5GJ75 292 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 TEX30Q5JUR7 227 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 HEPN1Q6WQI6 88 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 ANGPTL5Q86XS5 388 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 ZNF491Q8N8L2 437 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 Q8N9W7 124 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 SLC37A3Q8NCC5 494 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 OR6K6Q8NGW6 343 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 OR6N2Q8NGY6 317 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 OR52J3Q8NH60 311 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 THAP6Q8TBB0 222 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 KCTD7Q96MP8 289 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 HSPB9Q9BQS6 159 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 GON7Q9BXV9 100 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 ABCG5Q9H222 651 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 TUBA4BQ9H853 241 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 DNAJC4Q9NNZ3 241 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 GPR173Q9NS66 373 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 TAS2R1Q9NYW7 299 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 ENPP4Q9Y6X5 453 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 HSPG2P98160 4391 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 IGHV4OR15-8A0A075B7B6 117 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 A0A087WW49 117 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 IGHV3-72A0A0B4J1Y9 119 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 RPS10-NUDT3A0A1W2PQS6 291 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 NUDT3O95989 172 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 OR8U9P0C7N5 309 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 SMIM18P0DKX4 95 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 SPP1P10451 314 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 SPI1P17947 270 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 VDAC1P21796 283 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 GABRR1P24046 479 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 PRRX1P54821 245 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 MTCP1P56278 107 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 PITPNAQ00169 270 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 RUNX1Q01196 453 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 CYLC2Q14093 348 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-204ENST00000549064 DGCR6Q14129 220 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 CRMP1Q14194 572 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 OR52W1Q6IF63 320 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 ASRGL1Q7L266 308 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 NRARPQ7Z6K4 114 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 CYP4Z1Q86W10 505 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 ERI1Q8IV48 349 aaKnown RBP4.93□□□□□ -1.62
LIMA1-204ENST00000549064 GBGT1Q8N5D6 347 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 FAM86B1Q8N7N1 296 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 OR2T12Q8NG77 320 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 OR8J3Q8NGG0 315 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 MPLKIPQ8TAP9 179 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.93□□□□□ -1.62
LIMA1-204ENST00000549064 LEAP2Q969E1 77 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 CREB3L1Q96BA8 519 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 UBE2E2Q96LR5 201 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 OR4C12Q96R67 309 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 EGLN3Q9H6Z9 239 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 SRD5A3Q9H8P0 318 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 ACTR3BQ9P1U1 418 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 CD300AQ9UGN4 299 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 VSIG4Q9Y279 399 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 MYRFQ9Y2G1 1151 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 POLDIP2Q9Y2S7 368 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 U3KQV3 271 aa4.93□□□□□ -1.62
LIMA1-204ENST00000549064 IGLV5-39A0A0G2JS06 123 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 PQLC2LA1A4F0 135 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 A6NIN4 97 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 FAM183AA6NL82 134 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 LINC01619G3V211 115 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 G3V318 75 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 CTDSPLO15194 276 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 IDH3BO43837 385 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 HAND1O96004 215 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 NRASP01111 189 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 IGLV1-51P01701 117 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 CALCBP10092 127 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 NFYBP25208 207 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 MAPK3P27361 379 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-204ENST00000549064 OR3A1P47881 315 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 GLIPR1P48060 266 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 DLK1P80370 383 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 EWSR1Q01844 656 aaKnown RBP eCLIP4.92□□□□□ -1.62
LIMA1-204ENST00000549064 ZNF684Q5T5D7 378 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 LINC01590Q5TEZ4 76 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 LINC00322Q6ZN03 302 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-204ENST00000549064 TRPM8Q7Z2W7 1104 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 COMMD2Q86X83 199 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 ZNF573Q86YE8 665 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 TGIF2LXQ8IUE1 241 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-204ENST00000549064 ARHGAP24Q8N264 748 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 CASTOR1Q8WTX7 329 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 SH3GL1Q99961 368 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 SPXQ9BT56 116 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 OR51J1Q9H342 316 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 GAL3ST2Q9H3Q3 398 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 NIPAL2Q9H841 368 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 PLEKHA3Q9HB20 300 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 MTCH1Q9NZJ7 389 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 SLC7A11Q9UPY5 501 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 PIGLQ9Y2B2 252 aa4.92□□□□□ -1.62
LIMA1-204ENST00000549064 KLHDC2Q9Y2U9 406 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms