RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 PNLIPRP3Q17RR3 467 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 RNASE12Q5GAN4 147 aaKnown RBP10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 SIGIRRQ6IA17 410 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 LYPD2Q6UXB3 125 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 CCDC190Q86UF4 302 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 ZNRF1Q8ND25 227 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 SETD6Q8TBK2 473 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 ST8SIA4Q92187 359 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 H1FXQ92522 213 aaKnown RBP10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 SDSLQ96GA7 329 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 FAAP24Q9BTP7 215 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 WDR12Q9GZL7 423 aaKnown RBP10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 FAM234AQ9H0X4 552 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 IFT22Q9H7X7 185 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 SEBOXQ9HB31 216 aaPredicted RBP10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 ZNF581Q9P0T4 197 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 RCC2Q9P258 522 aaKnown RBP10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 SLC25A10Q9UBX3 287 aaPredicted RBP10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 ZNF222Q9UK12 451 aa10.2□□□□□ -0.78
CLSTN3-208ENST00000538933 STAB2Q8WWQ8 2551 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 TRAV24A0A0B4J272 114 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 TMEM235A6NFC5 223 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 MGST3O14880 152 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 TPPPO94811 219 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 TK1P04183 234 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 LMO1P25800 156 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 PTBP1P26599 531 aaKnown RBP eCLIP10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 IER3P46695 156 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 INPP1P49441 399 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 TMEM50BP56557 158 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 GNB2P62879 340 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 MRPS10P82664 201 aaKnown RBP10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 ZNF846Q147U1 533 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 ZNF260Q3ZCT1 412 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 PLAC9Q5JTB6 97 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 KRBOX4Q5JUW0 171 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 ATPAF1Q5TC12 328 aaPredicted RBP10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 OR8H2Q8N162 312 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 OR4S1Q8NGB4 309 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 SULT4A1Q9BR01 284 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 AUNIPQ9H7T9 357 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 IFT46Q9NQC8 304 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 KAAG1Q9UBP8 84 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 CLN8Q9UBY8 286 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 AK3Q9UIJ7 227 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 MAB21L2Q9Y586 359 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 DSCAML1Q8TD84 2053 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 DNAH1Q9P2D7 4330 aa10.19□□□□□ -0.78
CLSTN3-208ENST00000538933 TMEM82A0PJX8 343 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 TMEM30CPA0ZSE6 113 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 FOXI3A8MTJ6 420 aaPredicted RBP10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 K7N7A8 449 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 MFNGO00587 321 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 DVL1O14640 695 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 PSPNO60542 156 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 CA11O75493 328 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 TSPAN9O75954 239 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 SELLP14151 372 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 ETV6P41212 452 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 OR3A1P47881 315 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 NPY4RP50391 375 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 AESQ08117 197 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 GPR157Q5UAW9 335 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 HACD4Q5VWC8 232 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 TRAPPC6BQ86SZ2 158 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 NUDCD2Q8WVJ2 157 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 FCAMRQ8WWV6 532 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 WWC2-AS2Q96NR7 200 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 RIMS4Q9H426 269 aaPredicted RBP10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 C12orf4Q9NQ89 552 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 TRAPPC2LQ9UL33 140 aa10.18□□□□□ -0.78
CLSTN3-208ENST00000538933 DNAH7Q8WXX0 4024 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 LYSTQ99698 3801 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 MEIKINA0A087WXM9 373 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 CENPVL3A0A0U1RRI6 287 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 A0A1B0GW55 424 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 ZNF737O75373 536 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 LPLP06858 475 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 DUX4L2P0CJ85 424 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 DUX4L3P0CJ86 424 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 DUX4L4P0CJ87 422 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 DUX4L5P0CJ88 424 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 DUX4L6P0CJ89 424 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 DUX4L7P0CJ90 424 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 PTHLHP12272 177 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 AMY2BP19961 511 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 CBX5P45973 191 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 LSAMPQ13449 338 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 TRIQKQ629K1 86 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 DUX4L9Q6RFH8 374 aaPredicted RBP10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 RTN4RL2Q86UN3 420 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 LDLRAD3Q86YD5 345 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 PLPPR1Q8TBJ4 325 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 SCPEP1Q9HB40 452 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 AKIP1Q9NQ31 210 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 KCNIP1Q9NZI2 227 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 CTSZQ9UBR2 303 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 DUX4Q9UBX2 424 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 V9GYH0 126 aa10.17□□□□□ -0.78
CLSTN3-208ENST00000538933 A0A1W2PQ09 198 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms