RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 GPR176Q14439 515 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 CT45A1Q5HYN5 189 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 NR2C2APQ86WQ0 139 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 ODF3L1Q8IXM7 274 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 Q8N6K4 173 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 NKAIN3Q8N8D7 197 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 OR52M1Q8NGK5 317 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 OR2T6Q8NHC8 308 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 CT45A3Q8NHU0 189 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 FAM110DQ8TAY7 271 aaPredicted RBP8.47□□□□□ -1.05
CD44-227ENST00000528086 ARL11Q969Q4 196 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 MGLLQ99685 303 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 CITED2Q99967 270 aaPredicted RBP8.47□□□□□ -1.05
CD44-227ENST00000528086 SLC25A33Q9BSK2 321 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 TM2D1Q9BX74 207 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 LPAR5Q9H1C0 372 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 MMP27Q9H306 513 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 LIN7BQ9HAP6 207 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 ABCB10Q9NRK6 738 aa8.47□□□□□ -1.05
CD44-227ENST00000528086 IGHV3-72A0A0B4J1Y9 119 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 LINC01548A6NM66 108 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 OOSP1A8MZH6 123 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 M0QZ24 198 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 AIPO00170 330 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 LDLRAD4O15165 306 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 PDCD6O75340 191 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 OR2F2O95006 317 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 MPIG6BO95866 241 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 HBZP02008 142 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 SNRNP70P08621 437 aaKnown RBP8.46□□□□□ -1.06
CD44-227ENST00000528086 HSMCR30P0CW71 290 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 MAPK3P27361 379 aaPredicted RBP8.46□□□□□ -1.06
CD44-227ENST00000528086 REG1BP48304 166 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 PRRX1P54821 245 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 TMEM50BP56557 158 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 EMX1Q04741 257 aaPredicted RBP8.46□□□□□ -1.06
CD44-227ENST00000528086 ZNF816Q0VGE8 651 aaPredicted RBP8.46□□□□□ -1.06
CD44-227ENST00000528086 EBI3Q14213 229 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 P2RY14Q15391 338 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 TBCEQ15813 527 aaPredicted RBP8.46□□□□□ -1.06
CD44-227ENST00000528086 ABCA11PQ4W5N1 156 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 HSD17B12Q53GQ0 312 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 RBM48Q5RL73 367 aaKnown RBP8.46□□□□□ -1.06
CD44-227ENST00000528086 ZNF880Q6PDB4 577 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 C11orf88Q6PI97 169 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 SLC16A12Q6ZSM3 486 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 C6orf201Q7Z4U5 140 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 THNSL2Q86YJ6 484 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 FAM89BQ8N5H3 189 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 C8orf31Q8N9H6 132 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 UFD1Q92890 307 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 S100A13Q99584 98 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 FAAP24Q9BTP7 215 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 PRSS22Q9GZN4 317 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 PARP12Q9H0J9 701 aaKnown RBP8.46□□□□□ -1.06
CD44-227ENST00000528086 ACOT13Q9NPJ3 140 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 PLSCR3Q9NRY6 295 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 ETAA1Q9NY74 926 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 PITPNC1Q9UKF7 332 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 RAB26Q9ULW5 256 aa8.46□□□□□ -1.06
CD44-227ENST00000528086 AK6Q9Y3D8 172 aaKnown RBP8.46□□□□□ -1.06
CD44-227ENST00000528086 IGHV1-3A0A0C4DH29 117 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 MCRIP1C9JLW8 97 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 SDCBPO00560 298 aaPredicted RBP8.45□□□□□ -1.06
CD44-227ENST00000528086 SLC17A2O00624 439 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 SOCS1O15524 211 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 NAPSAO96009 420 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 GLAP06280 429 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 LPLP06858 475 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 ZNF137PP52743 207 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 CLDN12P56749 244 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 OR10A3P58181 314 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 CD83Q01151 205 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 MADCAM1Q13477 382 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 CD200R1LQ6Q8B3 271 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 SLC25A48Q6ZT89 311 aaKnown RBP8.45□□□□□ -1.06
CD44-227ENST00000528086 OR52L2PQ8NGH6 319 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 OR10V1Q8NGI7 309 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 NEK7Q8TDX7 302 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 CAPSLQ8WWF8 208 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 TOMM40LQ969M1 308 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 RPEQ96AT9 228 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 HDHD3Q9BSH5 251 aaPredicted RBP8.45□□□□□ -1.06
CD44-227ENST00000528086 CCDC90BQ9GZT6 254 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 TAF9BQ9HBM6 251 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 SPACA1Q9HBV2 294 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 GHRLQ9UBU3 117 aa8.45□□□□□ -1.06
CD44-227ENST00000528086 DENRO43583 198 aaKnown RBP8.44□□□□□ -1.06
CD44-227ENST00000528086 FBXO24O75426 580 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 SNRPBP14678 240 aaKnown RBP8.44□□□□□ -1.06
CD44-227ENST00000528086 BRS3P32247 399 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 CEACAM3P40198 252 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 DEFA6Q01524 100 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 HNF4GQ14541 408 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 HMGN3Q15651 99 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 MORN2Q502X0 79 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 PLAC9Q5JTB6 97 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 NKAPLQ5M9Q1 402 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 GLT8D1Q68CQ7 371 aa8.44□□□□□ -1.06
CD44-227ENST00000528086 Q6ZTK2 550 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms