RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 TMEM89A2RUT3 159 aa16.52■□□□□ 0.24
USP53-208ENST00000514305 C17orf98A8MV24 154 aa16.52■□□□□ 0.24
USP53-208ENST00000514305 PRTN3P24158 256 aa16.52■□□□□ 0.24
USP53-208ENST00000514305 CBX5P45973 191 aa16.52■□□□□ 0.24
USP53-208ENST00000514305 BPIFB3P59826 476 aa16.52■□□□□ 0.24
USP53-208ENST00000514305 ZNF273Q14593 569 aa16.52■□□□□ 0.24
USP53-208ENST00000514305 ZNF260Q3ZCT1 412 aa16.52■□□□□ 0.24
USP53-208ENST00000514305 RBMS3Q6XE24 437 aaKnown RBP16.52■□□□□ 0.24
USP53-208ENST00000514305 OR4K15Q8NH41 348 aa16.52■□□□□ 0.24
USP53-208ENST00000514305 SETD6Q8TBK2 473 aa16.52■□□□□ 0.24
USP53-208ENST00000514305 MRGPRDQ8TDS7 321 aa16.52■□□□□ 0.24
USP53-208ENST00000514305 CCDC107Q8WV48 283 aa16.52■□□□□ 0.24
USP53-208ENST00000514305 NXF2Q9GZY0 626 aaKnown RBP16.52■□□□□ 0.24
USP53-208ENST00000514305 UNKLQ9H9P5 680 aaKnown RBP16.52■□□□□ 0.24
USP53-208ENST00000514305 NAPSAO96009 420 aa16.51■□□□□ 0.23
USP53-208ENST00000514305 MELTFP08582 738 aa16.51■□□□□ 0.23
USP53-208ENST00000514305 ELK1P19419 428 aa16.51■□□□□ 0.23
USP53-208ENST00000514305 DTYMKP23919 212 aa16.51■□□□□ 0.23
USP53-208ENST00000514305 SRSF7Q16629 238 aaKnown RBP eCLIP16.51■□□□□ 0.23
USP53-208ENST00000514305 HEPN1Q6WQI6 88 aa16.51■□□□□ 0.23
USP53-208ENST00000514305 OR13D1Q8NGV5 346 aa16.51■□□□□ 0.23
USP53-208ENST00000514305 MRPL30Q8TCC3 161 aaKnown RBP16.51■□□□□ 0.23
USP53-208ENST00000514305 C22orf15Q8WYQ4 148 aa16.51■□□□□ 0.23
USP53-208ENST00000514305 ARL11Q969Q4 196 aa16.51■□□□□ 0.23
USP53-208ENST00000514305 UPRTQ96BW1 309 aa16.51■□□□□ 0.23
USP53-208ENST00000514305 OCSTAMPQ9BR26 566 aa16.51■□□□□ 0.23
USP53-208ENST00000514305 SIRPDQ9H106 197 aa16.51■□□□□ 0.23
USP53-208ENST00000514305 ZMAT3Q9HA38 289 aaKnown RBP16.51■□□□□ 0.23
USP53-208ENST00000514305 MBNL3Q9NUK0 354 aaKnown RBP16.51■□□□□ 0.23
USP53-208ENST00000514305 CALYQ9NYX4 217 aa16.51■□□□□ 0.23
USP53-208ENST00000514305 TENM1Q9UKZ4 2725 aa16.5■□□□□ 0.23
USP53-208ENST00000514305 FSHBP01225 129 aa16.5■□□□□ 0.23
USP53-208ENST00000514305 EIF4EP06730 217 aaKnown RBP16.5■□□□□ 0.23
USP53-208ENST00000514305 CCL3L1P16619 93 aa16.5■□□□□ 0.23
USP53-208ENST00000514305 KIR2DS4P43632 304 aa16.5■□□□□ 0.23
USP53-208ENST00000514305 KIR2DS1Q14954 304 aa16.5■□□□□ 0.23
USP53-208ENST00000514305 GPR157Q5UAW9 335 aa16.5■□□□□ 0.23
USP53-208ENST00000514305 OR13A1Q8NGR1 328 aa16.5■□□□□ 0.23
USP53-208ENST00000514305 DIRAS2Q96HU8 199 aa16.5■□□□□ 0.23
USP53-208ENST00000514305 AUNIPQ9H7T9 357 aa16.5■□□□□ 0.23
USP53-208ENST00000514305 EXTL2Q9UBQ6 330 aa16.5■□□□□ 0.23
USP53-208ENST00000514305 MRPS7Q9Y2R9 242 aaKnown RBP16.5■□□□□ 0.23
USP53-208ENST00000514305 CTDSP2O14595 271 aa16.49■□□□□ 0.23
USP53-208ENST00000514305 MMP9P14780 707 aa16.49■□□□□ 0.23
USP53-208ENST00000514305 PRSS3P35030 304 aa16.49■□□□□ 0.23
USP53-208ENST00000514305 TAS2R20P59543 309 aa16.49■□□□□ 0.23
USP53-208ENST00000514305 VMO1Q7Z5L0 202 aa16.49■□□□□ 0.23
USP53-208ENST00000514305 OR52M1Q8NGK5 317 aa16.49■□□□□ 0.23
USP53-208ENST00000514305 LINC00574Q9H8X3 128 aa16.49■□□□□ 0.23
USP53-208ENST00000514305 IDI2-AS1Q9NZ38 188 aa16.49■□□□□ 0.23
USP53-208ENST00000514305 KCNK7Q9Y2U2 307 aa16.49■□□□□ 0.23
USP53-208ENST00000514305 SESN1Q9Y6P5 492 aa16.49■□□□□ 0.23
USP53-208ENST00000514305 TMEM235A6NFC5 223 aa16.48■□□□□ 0.23
USP53-208ENST00000514305 IGHV1-8P0DP01 117 aa16.48■□□□□ 0.23
USP53-208ENST00000514305 ZNF880Q6PDB4 577 aa16.48■□□□□ 0.23
USP53-208ENST00000514305 RTN4RL2Q86UN3 420 aa16.48■□□□□ 0.23
USP53-208ENST00000514305 DYRK2Q92630 601 aa16.48■□□□□ 0.23
USP53-208ENST00000514305 GALMQ96C23 342 aa16.48■□□□□ 0.23
USP53-208ENST00000514305 TAF9BQ9HBM6 251 aa16.48■□□□□ 0.23
USP53-208ENST00000514305 ZNF286AQ9HBT8 521 aa16.48■□□□□ 0.23
USP53-208ENST00000514305 ESM1Q9NQ30 184 aa16.48■□□□□ 0.23
USP53-208ENST00000514305 NUP50Q9UKX7 468 aa16.48■□□□□ 0.23
USP53-208ENST00000514305 NPIPB11E5RHQ5 1161 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 SULT1C2O00338 296 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 RGS11O94810 467 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 CGB3P0DN86 165 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 CGB7P0DN87 165 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 DLX6P56179 175 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 UBA52P62987 128 aaKnown RBP16.47■□□□□ 0.23
USP53-208ENST00000514305 MRPS10P82664 201 aaKnown RBP16.47■□□□□ 0.23
USP53-208ENST00000514305 FOXB2Q5VYV0 432 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 TCF23Q7RTU1 214 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 LAX1Q8IWV1 398 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 Q8N7P7 452 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 ZDHHC22Q8N966 263 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 SCPEP1Q9HB40 452 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 Q9N2K0 584 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 SIRT7Q9NRC8 400 aa16.47■□□□□ 0.23
USP53-208ENST00000514305 TRDCB7Z8K6 153 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 FCGR3AP08637 254 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 RCC1P18754 421 aaPredicted RBP16.46■□□□□ 0.23
USP53-208ENST00000514305 UBE2E1P51965 193 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 PRRX1P54821 245 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 LGALS4P56470 323 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 HTD2P86397 168 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 C17orf58Q2M2W7 97 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 Q3ZCU0 254 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 STEAP3Q658P3 488 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 PYHIN1Q6K0P9 492 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 CNIH2Q6PI25 160 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 PRR18Q8N4B5 295 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 LHX4Q969G2 390 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 TBX15Q96SF7 602 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 TMEM133Q9H2Q1 129 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 IFT46Q9NQC8 304 aa16.46■□□□□ 0.23
USP53-208ENST00000514305 MEX3AA1L020 520 aaKnown RBP16.45■□□□□ 0.22
USP53-208ENST00000514305 FABP12A6NFH5 140 aa16.45■□□□□ 0.22
USP53-208ENST00000514305 C12orf77C9JDV5 145 aa16.45■□□□□ 0.22
USP53-208ENST00000514305 TOR1AO14656 332 aa16.45■□□□□ 0.22
USP53-208ENST00000514305 DIRAS3O95661 229 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms