RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 GNB1P62873 340 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 C2orf68Q2NKX9 166 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 FAM214BQ7L5A3 538 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 TOLLIPQ9H0E2 274 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 ZNF331Q9NQX6 463 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 PRSS50Q9UI38 385 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 UMODP07911 640 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 FGF8P55075 233 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 VMA21Q3ZAQ7 101 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 TMEM56Q96MV1 263 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 FAM117AQ9C073 453 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 SLC25A22Q9H936 323 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 NAT8Q9UHE5 227 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 hCG_38984A0A1B0GV85 526 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 SUCLG1P53597 346 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 ZNF273Q14593 569 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 C1QL2Q7Z5L3 287 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 IL22RA2Q969J5 263 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 IL36GQ9NZH8 169 aa9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 COL4A4P53420 1690 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-205ENST00000503057 COX7A2P2O60397 106 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 HOXB1P14653 301 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 BMP5P22003 454 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 GALR1P47211 349 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 HES1Q14469 280 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 C4orf17Q53FE4 359 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 CDCP2Q5VXM1 449 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 SELENOHQ8IZQ5 122 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 SIRT7Q9NRC8 400 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 KIAA1456Q9P272 454 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 VAX2Q9UIW0 290 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 SYNGR1O43759 233 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 OR2H2O95918 312 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 SP9P0CG40 484 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 RPS2P15880 293 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 HNF1AP20823 631 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 ZNF703Q9H7S9 590 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 AKIRIN1Q9H9L7 192 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 J3QW42 95 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 OR5G3P0C626 314 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 SPINK9Q5DT21 86 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 HES7Q9BYE0 225 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 LYRM2Q9NU23 88 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 RCC2Q9P258 522 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 C3orf80F5H4A9 247 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 PGLYRP1O75594 196 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 RFPL3SP0C7P2 107 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 FHL1Q13642 323 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 SSX2Q16385 188 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 TMEM252Q8N6L7 170 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 TMPRSS5Q9H3S3 457 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 MMP24Q9Y5R2 645 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 ZNF320A2RRD8 509 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 G6PCP35575 357 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 RHOBP62745 196 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 AESQ08117 197 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 GUCA2BQ16661 112 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 FAM210BQ96KR6 192 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 SEMA5BQ9P283 1151 aa9.28□□□□□ -0.92
LIMCH1-205ENST00000503057 TRGV8A0A0C4DH27 118 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 OR5H1A6NKK0 313 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 G3V3Q6 166 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 OPN1MWP04001 364 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 OPN1MW2P0DN77 364 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 OPN1MW3P0DN78 364 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 RAB5AP20339 215 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 CTSSP25774 331 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 HOXA6P31267 233 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 MRGPRGQ86SM5 289 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 MOGAT3Q86VF5 341 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 TMEM18Q96B42 140 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 RSPO3Q9BXY4 272 aaPredicted RBP9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 RNF7Q9UBF6 113 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 SLC45A2Q9UMX9 530 aa9.27□□□□□ -0.92
LIMCH1-205ENST00000503057 TRAV14DV4A0A0A6YYC5 116 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 TRAV39A0A0B4J263 110 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 OR10J4P0C629 311 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 COL10A1Q03692 680 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 DBX2Q6ZNG2 339 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF645Q8N7E2 425 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 RTBDNQ9BSG5 229 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 CHRDL1Q9BU40 450 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 SEC16AO15027 2179 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 DLK1P80370 383 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 KHDC3LQ587J8 217 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 H1FOOQ8IZA3 346 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 TCTEX1D1Q8N7M0 179 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 OR52M1Q8NGK5 317 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 DLL3Q9NYJ7 618 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 FOXJ2Q9P0K8 574 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 H3BQ15 152 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 NAT2P11245 290 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 MRPS11P82912 194 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 FABP9Q0Z7S8 132 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 FAM74A3Q4VXF1 159 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 PHYHD1Q5SRE7 291 aa9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 PUSL1Q8N0Z8 303 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF735P0CB33 412 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 SERF2P84101 59 aa9.26□□□□□ -0.93
LIMCH1-205ENST00000503057 P2RY6Q15077 328 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms