RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 ZNF69Q9UC07 566 aa17.97■□□□□ 0.47
SMC4-221ENST00000489573 FAM172BPA6NC97 362 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 PPIHO43447 177 aaKnown RBP17.96■□□□□ 0.47
SMC4-221ENST00000489573 NDUFS7O75251 213 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 ZNF728P0DKX0 622 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 GZMHP20718 246 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 SSTR5P35346 364 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 C4orf46Q504U0 113 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 H1FOOQ8IZA3 346 aaPredicted RBP17.96■□□□□ 0.47
SMC4-221ENST00000489573 FGFRL1Q8N441 504 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 CAPSLQ8WWF8 208 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 TOMM40LQ969M1 308 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 ARL11Q969Q4 196 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 C5orf66Q9H5L9 145 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 OR1A1Q9P1Q5 309 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 SLC23A1Q9UHI7 598 aa17.96■□□□□ 0.47
SMC4-221ENST00000489573 SNRPGP15A8MWD9 76 aa17.96■□□□□ 0.46
SMC4-221ENST00000489573 C15orf65H3BRN8 121 aa17.96■□□□□ 0.46
SMC4-221ENST00000489573 SPINT2O43291 252 aa17.96■□□□□ 0.46
SMC4-221ENST00000489573 HSPA12AO43301 675 aa17.96■□□□□ 0.46
SMC4-221ENST00000489573 OR4E1P0C645 316 aa17.96■□□□□ 0.46
SMC4-221ENST00000489573 TRAPPC2P0DI81 140 aa17.96■□□□□ 0.46
SMC4-221ENST00000489573 TRAPPC2BP0DI82 140 aa17.96■□□□□ 0.46
SMC4-221ENST00000489573 UCP3P55916 312 aa17.96■□□□□ 0.46
SMC4-221ENST00000489573 TMEM33P57088 247 aa17.96■□□□□ 0.46
SMC4-221ENST00000489573 FAHD2BQ6P2I3 314 aaPredicted RBP17.96■□□□□ 0.46
SMC4-221ENST00000489573 ADAD2Q8NCV1 583 aaKnown RBP17.96■□□□□ 0.46
SMC4-221ENST00000489573 ZFAND1Q8TCF1 268 aa17.96■□□□□ 0.46
SMC4-221ENST00000489573 FAHD2AQ96GK7 314 aa17.96■□□□□ 0.46
SMC4-221ENST00000489573 ZNF221Q9UK13 617 aa17.96■□□□□ 0.46
SMC4-221ENST00000489573 C14orf166Q9Y224 244 aaKnown RBP17.96■□□□□ 0.46
SMC4-221ENST00000489573 HRNRQ86YZ3 2850 aaPredicted RBP17.95■□□□□ 0.46
SMC4-221ENST00000489573 TRGV10A0A0A0MS01 117 aa17.95■□□□□ 0.46
SMC4-221ENST00000489573 MEX3AA1L020 520 aaKnown RBP17.95■□□□□ 0.46
SMC4-221ENST00000489573 HMX3A6NHT5 357 aa17.95■□□□□ 0.46
SMC4-221ENST00000489573 DVL1O14640 695 aa17.95■□□□□ 0.46
SMC4-221ENST00000489573 CREBL2O60519 120 aaPredicted RBP17.95■□□□□ 0.46
SMC4-221ENST00000489573 FCN3O75636 299 aa17.95■□□□□ 0.46
SMC4-221ENST00000489573 CTSDP07339 412 aaPredicted RBP17.95■□□□□ 0.46
SMC4-221ENST00000489573 PI3P19957 117 aa17.95■□□□□ 0.46
SMC4-221ENST00000489573 RRAS2P62070 204 aaPredicted RBP17.95■□□□□ 0.46
SMC4-221ENST00000489573 TMEM155Q4W5P6 130 aa17.95■□□□□ 0.46
SMC4-221ENST00000489573 ZNF626Q68DY1 528 aa17.95■□□□□ 0.46
SMC4-221ENST00000489573 RTBDNQ9BSG5 229 aaPredicted RBP17.95■□□□□ 0.46
SMC4-221ENST00000489573 ZBTB25P24278 435 aa17.94■□□□□ 0.46
SMC4-221ENST00000489573 UBE2MP61081 183 aaKnown RBP17.94■□□□□ 0.46
SMC4-221ENST00000489573 SLC38A6Q8IZM9 456 aa17.94■□□□□ 0.46
SMC4-221ENST00000489573 ZNF295-AS1Q8N0V1 137 aa17.94■□□□□ 0.46
SMC4-221ENST00000489573 OR52B4Q8NGK2 314 aa17.94■□□□□ 0.46
SMC4-221ENST00000489573 RAB9BQ9NP90 201 aa17.94■□□□□ 0.46
SMC4-221ENST00000489573 hADV38S2A0JD32 116 aa17.93■□□□□ 0.46
SMC4-221ENST00000489573 HEXAP06865 529 aa17.93■□□□□ 0.46
SMC4-221ENST00000489573 RPS2P15880 293 aaKnown RBP17.93■□□□□ 0.46
SMC4-221ENST00000489573 AKR1C4P17516 323 aa17.93■□□□□ 0.46
SMC4-221ENST00000489573 MEF2CQ06413 473 aaPredicted RBP17.93■□□□□ 0.46
SMC4-221ENST00000489573 TCF23Q7RTU1 214 aa17.93■□□□□ 0.46
SMC4-221ENST00000489573 ZNF431Q8TF32 576 aaPredicted RBP17.93■□□□□ 0.46
SMC4-221ENST00000489573 CORO2AQ92828 525 aa17.93■□□□□ 0.46
SMC4-221ENST00000489573 TMEM230Q96A57 120 aa17.93■□□□□ 0.46
SMC4-221ENST00000489573 MED28Q9H204 178 aa17.93■□□□□ 0.46
SMC4-221ENST00000489573 RDH8Q9NYR8 311 aa17.93■□□□□ 0.46
SMC4-221ENST00000489573 CALYQ9NYX4 217 aa17.93■□□□□ 0.46
SMC4-221ENST00000489573 LPAR3Q9UBY5 353 aa17.93■□□□□ 0.46
SMC4-221ENST00000489573 OR2W1Q9Y3N9 320 aa17.93■□□□□ 0.46
SMC4-221ENST00000489573 SSNA1O43805 119 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 CGB3P0DN86 165 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 CGB7P0DN87 165 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 CEACAM6P40199 344 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 HTD2P86397 168 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 DHRS2Q13268 280 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 PPP1R1AQ13522 171 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 TMEM128Q5BJH2 165 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 LPCAT3Q6P1A2 487 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 SPICQ8N5J4 248 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 OR52L2PQ8NGH6 319 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 RFESDQ8TAC1 157 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 NINJ1Q92982 152 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 NEURL2Q9BR09 285 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 C19orf12Q9NSK7 152 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 MIOXQ9UGB7 285 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 LINC00312Q9Y6C7 94 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 HECTD1Q9ULT8 2610 aa17.92■□□□□ 0.46
SMC4-221ENST00000489573 IGKV1D-13A0A0B4J2D9 117 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 ZNF729A6NN14 1252 aaPredicted RBP17.91■□□□□ 0.46
SMC4-221ENST00000489573 HLA-AP01891 365 aaKnown RBP17.91■□□□□ 0.46
SMC4-221ENST00000489573 IGKV1-13P0DP09 117 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 GPR6P46095 362 aaPredicted RBP17.91■□□□□ 0.46
SMC4-221ENST00000489573 RPL31P62899 125 aaKnown RBP17.91■□□□□ 0.46
SMC4-221ENST00000489573 DHODHQ02127 395 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 ABCA11PQ4W5N1 156 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 CD276Q5ZPR3 534 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 LYG2Q86SG7 212 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 AKAP14Q86UN6 197 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 SECTM1Q8WVN6 248 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 H1FXQ92522 213 aaKnown RBP17.91■□□□□ 0.46
SMC4-221ENST00000489573 RSRP1Q9BUV0 290 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 TOLLIPQ9H0E2 274 aa17.91■□□□□ 0.46
SMC4-221ENST00000489573 UBE2J1Q9Y385 318 aaPredicted RBP17.91■□□□□ 0.46
SMC4-221ENST00000489573 SPTAN1Q13813 2472 aaKnown RBP17.91■□□□□ 0.46
SMC4-221ENST00000489573 KBTBD11-OT1A0A1B0GTJ5 212 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms