RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 PLCXD3Q63HM9 321 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 WDR25Q64LD2 544 aaPredicted RBP11.41□□□□□ -0.58
USP40-214ENST00000483519 CYP2G1PQ6ZSU1 146 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 C16orf82Q7Z2V1 217 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 C5orf24Q7Z6I8 188 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 KMT5CQ86Y97 462 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 DNASE2BQ8WZ79 361 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 EXTL1Q92935 676 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 TMEM68Q96MH6 324 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 SMIM7Q9BQ49 75 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 SLC22A20A6NK97 555 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 H3BP45 60 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 SYNGR3O43761 229 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 TUBG1P23258 451 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 PDLIM4P50479 330 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 FGF8P55075 233 aaPredicted RBP11.4□□□□□ -0.58
USP40-214ENST00000483519 HNRNPKP61978 463 aaKnown RBP eCLIP11.4□□□□□ -0.58
USP40-214ENST00000483519 SERF2P84101 59 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 HNF4GQ14541 408 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 RHBDD2Q6NTF9 364 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 ZNF66Q6ZN08 573 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 OR1F12Q8NHA8 337 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 TMEM18Q96B42 140 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 SPACA9Q96E40 222 aaPredicted RBP11.4□□□□□ -0.58
USP40-214ENST00000483519 PIAS2O75928 621 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 SLC25A6P12236 298 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 MDH2P40926 338 aaKnown RBP11.4□□□□□ -0.58
USP40-214ENST00000483519 PRSS12P56730 875 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 ZNF726P1Q15940 193 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 IQCJQ1A5X6 159 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 TMEM241Q24JQ0 296 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 SEMA5BQ9P283 1151 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 PRSS50Q9UI38 385 aa11.4□□□□□ -0.58
USP40-214ENST00000483519 FAM90A10PA6NDY2 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A18PA6NE21 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A16PA6NEW6 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A20PA6NIJ5 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A8PA6NJQ4 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A7PA6NKC0 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A22PA8MWA6 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A12PA8MX19 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A5PA8MXJ8 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A23PA8MXZ1 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 H7BYZ3 331 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A15PP0C7V4 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 METTL15P1P0C7V9 234 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A13PP0C7W8 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A14PP0C7W9 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 FAM90A24PP0C7X0 464 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 CCKARP32238 428 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 APLNRP35414 380 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 GALR1P47211 349 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 IDH3GP51553 393 aaPredicted RBP11.39□□□□□ -0.59
USP40-214ENST00000483519 RNPS1Q15287 305 aaKnown RBP11.39□□□□□ -0.59
USP40-214ENST00000483519 ZNF774Q6NX45 483 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 GPR137CQ8N3F9 429 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 TMEM170AQ8WVE7 144 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 RLN3Q8WXF3 142 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 PINX1Q96BK5 328 aaKnown RBP11.39□□□□□ -0.59
USP40-214ENST00000483519 ADGRG7Q96K78 797 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 RBKSQ9H477 322 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 IGHV3-15A0A0B4J1V0 119 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 KIR2DS1A0A191URI9 304 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 MAP1LC3B2A6NCE7 125 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 EREGO14944 169 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 IL18BPO95998 194 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 CTXN2P0C2S0 81 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 KIR2DS4P43632 304 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 PMS2P11Q13670 270 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 KIR2DS1Q14954 304 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 BSXQ3C1V8 233 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 NKAIN1Q4KMZ8 207 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 TMEM41BQ5BJD5 291 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 WDR73Q6P4I2 378 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 ZNF611Q8N823 705 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 OR51G1Q8NGK1 321 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 GPHA2Q96T91 129 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 MAP1LC3BQ9GZQ8 125 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 VSIRQ9H7M9 311 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 CCL28Q9NRJ3 127 aa11.39□□□□□ -0.59
USP40-214ENST00000483519 IGKV1D-13A0A0B4J2D9 117 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 ZNF816-ZNF321PA0A0X1KG74 233 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 A0A1B0GWJ7 208 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 A0A1W2PR77 199 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 TUSC2O75896 110 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 KBTBD11O94819 623 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 CD55P08174 381 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 CST2P09228 141 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 IGKV1-13P0DP09 117 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 HBG1P69891 147 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 HBG2P69892 147 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 TNFRSF9Q07011 255 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 P2RY6Q15077 328 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 ACOT6Q3I5F7 207 aaPredicted RBP11.38□□□□□ -0.59
USP40-214ENST00000483519 RABEPKQ7Z6M1 372 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 NECAP1Q8NC96 275 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 PIGCQ92535 297 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 ZNF318Q5VUA4 2279 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 hCG_38984A0A1B0GV85 526 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 TP53I11O14683 189 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms