RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 HMGN3Q15651 99 aa13.73□□□□□ -0.21
SCAF11-206ENST00000474828 NKAPLQ5M9Q1 402 aa13.73□□□□□ -0.21
SCAF11-206ENST00000474828 UTF1Q5T230 341 aa13.73□□□□□ -0.21
SCAF11-206ENST00000474828 RBMS3Q6XE24 437 aaKnown RBP13.73□□□□□ -0.21
SCAF11-206ENST00000474828 ABHD12Q8N2K0 398 aa13.73□□□□□ -0.21
SCAF11-206ENST00000474828 OR4K15Q8NH41 348 aa13.73□□□□□ -0.21
SCAF11-206ENST00000474828 RAB3CQ96E17 227 aa13.73□□□□□ -0.21
SCAF11-206ENST00000474828 MALSU1Q96EH3 234 aa13.73□□□□□ -0.21
SCAF11-206ENST00000474828 RAB9BQ9NP90 201 aa13.73□□□□□ -0.21
SCAF11-206ENST00000474828 AK3Q9UIJ7 227 aa13.73□□□□□ -0.21
SCAF11-206ENST00000474828 TRAPPC2LQ9UL33 140 aa13.73□□□□□ -0.21
SCAF11-206ENST00000474828 DNAJC9-AS1A6NH13 148 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 SERPINE3A8MV23 424 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 RNASE1P07998 156 aaKnown RBP13.72□□□□□ -0.21
SCAF11-206ENST00000474828 COX7A1P24310 79 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 DYNLT3P51808 116 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 TMBIM6P55061 237 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 UBA52P62987 128 aaKnown RBP13.72□□□□□ -0.21
SCAF11-206ENST00000474828 HTD2P86397 168 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 SRSF7Q16629 238 aaKnown RBP eCLIP13.72□□□□□ -0.21
SCAF11-206ENST00000474828 GPR107Q5VW38 600 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 MOB1BQ7L9L4 216 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 LINC00311Q8N616 119 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 OR5H6Q8NGV6 325 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 OR9G1Q8NH87 305 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 FAM216AQ8WUB2 273 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 CCDC107Q8WV48 283 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 C17orf50Q8WW18 174 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 SSMEM1Q8WWF3 244 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 ARL11Q969Q4 196 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 ABCG5Q9H222 651 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 TAF9BQ9HBM6 251 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 RHBDL2Q9NX52 303 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 KIAA2026Q5HYC2 2103 aa13.72□□□□□ -0.21
SCAF11-206ENST00000474828 COL6A5A8TX70 2615 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 ARG1P05089 322 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 BAMBIQ13145 260 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 HLA-DRB5Q30154 266 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 IDNKQ5T6J7 187 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 STEAP3Q658P3 488 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 Q6ZS49 121 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 LHFPL4Q7Z7J7 247 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 DYNAPQ8N1N2 210 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 ZNF439Q8NDP4 499 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 RFESDQ8TAC1 157 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 CMTM3Q96MX0 182 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 C12orf4Q9NQ89 552 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 GFOD1Q9NXC2 390 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 MGAT4AQ9UM21 535 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 FAM96BQ9Y3D0 163 aa13.71□□□□□ -0.21
SCAF11-206ENST00000474828 A0A1W2PRD5 423 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 A0A1W2PRF3 423 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 A0A1W2PRM7 423 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 J3QR06 171 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 SPINT2O43291 252 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 HOXA3O43365 443 aaPredicted RBP13.7□□□□□ -0.22
SCAF11-206ENST00000474828 HBZP02008 142 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 SERPINB10P48595 397 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 KRTAP24-1Q3LI83 254 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 OLFML2AQ68BL7 652 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 PIFOQ8TCI5 191 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 RAB2BQ8WUD1 216 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 CREB3L1Q96BA8 519 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 ATG5Q9H1Y0 275 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 Q9N2K0 584 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 DPM3Q9P2X0 92 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 SCOCQ9UIL1 159 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 PSG11Q9UQ72 335 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 FBN3Q75N90 2809 aa13.7□□□□□ -0.22
SCAF11-206ENST00000474828 OOSP1A8MZH6 123 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 BUB1B-PAK6H3BSN5 160 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 TRIM77I1YAP6 450 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 DIRAS3O95661 229 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 GSTP1P09211 210 aaKnown RBP13.69□□□□□ -0.22
SCAF11-206ENST00000474828 HTR1DP28221 377 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 ZNF137PP52743 207 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 PRRX1P54821 245 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 LGALS4P56470 323 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 RPL15P61313 204 aaKnown RBP13.69□□□□□ -0.22
SCAF11-206ENST00000474828 ZNF260Q3ZCT1 412 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 OR1L1Q8NH94 360 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 ACOT12Q8WYK0 555 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 HDHD3Q9BSH5 251 aaPredicted RBP13.69□□□□□ -0.22
SCAF11-206ENST00000474828 TOLLIPQ9H0E2 274 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 MMP28Q9H239 520 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 DCSTAMPQ9H295 470 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 JPT1Q9UK76 154 aa13.69□□□□□ -0.22
SCAF11-206ENST00000474828 IGHV4-59P01825 116 aa13.68□□□□□ -0.22
SCAF11-206ENST00000474828 GNB3P16520 340 aa13.68□□□□□ -0.22
SCAF11-206ENST00000474828 HACD4Q5VWC8 232 aa13.68□□□□□ -0.22
SCAF11-206ENST00000474828 OR5R1Q8NH85 324 aa13.68□□□□□ -0.22
SCAF11-206ENST00000474828 NDNFQ8TB73 568 aa13.68□□□□□ -0.22
SCAF11-206ENST00000474828 TMEM158Q8WZ71 300 aa13.68□□□□□ -0.22
SCAF11-206ENST00000474828 ZDHHC16Q969W1 377 aa13.68□□□□□ -0.22
SCAF11-206ENST00000474828 ST6GALNAC6Q969X2 333 aa13.68□□□□□ -0.22
SCAF11-206ENST00000474828 CMSS1Q9BQ75 279 aaKnown RBP13.68□□□□□ -0.22
SCAF11-206ENST00000474828 OCSTAMPQ9BR26 566 aa13.68□□□□□ -0.22
SCAF11-206ENST00000474828 DPAGT1Q9H3H5 408 aa13.68□□□□□ -0.22
SCAF11-206ENST00000474828 KCNIP1Q9NZI2 227 aa13.68□□□□□ -0.22
SCAF11-206ENST00000474828 LEUTXA8MZ59 168 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms