RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TGIF2LXQ8IUE1 241 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 TMEFF1Q8IYR6 380 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 LEPROTL1O95214 131 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 CCSMST1Q4G0I0 132 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 MED29Q9NX70 200 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 TUBD1Q9UJT1 453 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 TMEM250H0YL14 139 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 PLPP3O14495 311 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 CDK2AP1O14519 115 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 CHST1O43916 411 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 AMY1AP04745 511 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 IER3P46695 156 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 TCRBV16S1A1N1A0A5B0 115 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 OR4A8P0C604 315 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 FSTP19883 344 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 HCFC1P51610 2035 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 R3HDM4Q96D70 268 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 NPVFQ9HCQ7 196 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 ETHE1O95571 254 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 WNT3P56703 355 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 EWSR1Q01844 656 aaKnown RBP eCLIP11.75□□□□□ -0.53
COL6A3-209ENST00000472056 AGERQ15109 404 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 PSG5Q15238 335 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 STPG3Q8N7X2 389 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 WDR31Q8NA23 367 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 OR8A1Q8NGG7 326 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 OR2I1PQ8NGU4 316 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 CXXC4Q9H2H0 198 aa11.75□□□□□ -0.53
COL6A3-209ENST00000472056 TMEM262E9PQX1 116 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 NRG2O14511 850 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-209ENST00000472056 HLA-DQB1P01920 261 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 OR1L8Q8NGR8 309 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 ISOC2Q96AB3 205 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 ZNF775Q96BV0 537 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-209ENST00000472056 TRAV38-1A0A0B4J264 116 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 A0A1B0GW15 77 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 C19orf67A6NJJ6 358 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 NMBP08949 121 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 TGIF2LYQ8IUE0 185 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 Q8WTZ3 238 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FCGR3BO75015 233 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FGF8P55075 233 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-209ENST00000472056 ZNF750Q32MQ0 723 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 MOB3BQ86TA1 216 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 CYB561D1Q8N8Q1 229 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 SYT8Q8NBV8 401 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 GPR27Q9NS67 375 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 CISD1Q9NZ45 108 aaKnown RBP11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A10PA6NDY2 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A18PA6NE21 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A16PA6NEW6 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A20PA6NIJ5 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A8PA6NJQ4 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A7PA6NKC0 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A22PA8MWA6 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A12PA8MX19 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A5PA8MXJ8 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A23PA8MXZ1 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A15PP0C7V4 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A13PP0C7W8 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A14PP0C7W9 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM90A24PP0C7X0 464 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 ETFBKMTQ8IXQ9 262 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 SIT1Q9Y3P8 196 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 PLXNA2O75051 1894 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 UBR3Q6ZT12 1888 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 K7EQS6 105 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 DNASE2O00115 360 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-209ENST00000472056 FAM157CP0CG43 387 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 CEACAM16Q2WEN9 425 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 NPTNQ9Y639 398 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 WNK1Q9H4A3 2382 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 RIPPLY2Q5TAB7 128 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 TMEM30AQ9NV96 361 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 GLI3P10071 1580 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 CD1BP29016 333 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 GLIPR1P48060 266 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 LINC01559Q495D7 138 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 LYG1Q8N1E2 194 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 ASB5Q8WWX0 329 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 TRPM7Q96QT4 1865 aa11.74□□□□□ -0.53
COL6A3-209ENST00000472056 OR3A4PP47883 348 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 ZNF385CQ66K41 422 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-209ENST00000472056 ASPDHA6ND91 283 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 ID1P41134 155 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 HOGA1Q86XE5 327 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 ZCCHC14Q8WYQ9 949 aaKnown RBP11.73□□□□□ -0.53
COL6A3-209ENST00000472056 NPIPB6E9PJ23 425 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 MFAP2P55001 183 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 ASB10Q8WXI3 467 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 RND1Q92730 232 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 SIGLEC5O15389 551 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 CCDC144NLQ6NUI1 221 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 HIST1H4GQ99525 98 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 RNF122Q9H9V4 155 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 KCNK7Q9Y2U2 307 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 VWA8A3KMH1 1905 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 A0A087WWC5 75 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 C17orf47Q8NEP4 570 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 HSPB9Q9BQS6 159 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms