RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SEC61A2Q9H9S3 476 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 APOBEC3GQ9HC16 384 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM74BQ9NUR3 256 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 ASIC5Q9NY37 505 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 BET1LQ9NYM9 111 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF226Q9NYT6 803 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 IDI2-AS1Q9NZ38 188 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 SCN1AP35498 2009 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 ADAMTS20P59510 1910 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 TSC2P49815 1807 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 TRAV36DV7A0A075B6V5 113 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 A0A0A6YYD5 115 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 A0A0G2JMM0 328 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 A0A1W2PPB8 328 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 FAM183AA6NL82 134 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 KIR3DP1A8MWS1 328 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 E7EQ34 232 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 G3V3Q6 166 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 RRHO14718 337 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 GCM2O75603 506 aaPredicted RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 OR7C1O76099 320 aaPredicted RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 CT45A6P0DMU7 189 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 CT45A5P0DMU8 189 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 CT45A7P0DMV0 189 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 GNB3P16520 340 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 CSRP1P21291 193 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 NFYAP23511 347 aaPredicted RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 ATP6V0CP27449 155 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 PYCR1P32322 319 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 TGFBR1P36897 503 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 REG1BP48304 166 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 GNG4P50150 75 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF83P51522 516 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 SLURP1P55000 103 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 XGP55808 180 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 RPS13P62277 151 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 AKR1C1Q04828 323 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 DHRS2Q13268 280 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 TRMT12Q53H54 448 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 CT45A1Q5HYN5 189 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF549Q6P9A3 640 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 TBPL2Q6SJ96 375 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 ACOT1Q86TX2 421 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 MEX3DQ86XN8 651 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 OR2L13Q8N349 312 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 FAM24BQ8N5W8 94 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF611Q8N823 705 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 BOLLQ8N9W6 283 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 ACVR1CQ8NER5 493 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 OR11G2Q8NGC1 345 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 OR5B3Q8NH48 314 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 CT45A3Q8NHU0 189 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 SGK494Q96LW2 274 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 CABLES2Q9BTV7 478 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 C19orf24Q9BVV8 132 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 GATA5Q9BWX5 397 aaPredicted RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 SPANXB1Q9NS25 103 aaPredicted RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM45AQ9NWC5 275 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 KCNS2Q9ULS6 477 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 V9GYH0 126 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 LMO7DNF2Z398 122 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 PLPP1O14494 284 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 EEDO75530 441 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 AIFM1O95831 613 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 HLA-DQB1P01920 261 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 SULT1A3P0DMM9 295 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 SULT1A4P0DMN0 295 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 HTR1DP28221 377 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 NTSP30990 170 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 NSG1P42857 185 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 GNG5P63218 68 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 SLC35B1P78383 322 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 EWSR1Q01844 656 aaKnown RBP eCLIP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF79Q15937 498 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 OR10K2Q6IF99 312 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM183AQ8IXX5 376 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM151AQ8N4L1 468 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 SCCPDHQ8NBX0 429 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 OR2T12Q8NG77 320 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 OR13A1Q8NGR1 328 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 NEIL3Q8TAT5 605 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 C2orf15Q8WU43 125 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 SLC25A43Q8WUT9 341 aaPredicted RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 PP6455Q8WZ26 134 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM106AQ96A25 262 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM101Q96IK0 257 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 C20orf173Q96LM9 149 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 LINC00477Q96M19 166 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 YPEL4Q96NS1 127 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 MS4A10Q96PG2 267 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 NAA38Q9BRA0 125 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 MRPL45Q9BRJ2 306 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 MS4A6AQ9H2W1 248 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 EXOSC4Q9NPD3 245 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 GPR84Q9NQS5 396 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF319Q9P2F9 582 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 VAX2Q9UIW0 290 aa4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 SIRT4Q9Y6E7 314 aaPredicted RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.06□□□□□ -1.76
CCDC88A-209ENST00000456975 FASNP49327 2511 aaKnown RBP4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms