RNA–Protein interactions for RNA: ENST00000429738.1

MRPL28-203, Transcript of mitochondrial ribosomal protein L28, human

TSL 2 BASIC

Gene MRPL28, Length 310 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL28-203	ENST00000429738	IGKV1-33	P01594	117 aa		14.04	□□□□□ -0.16
MRPL28-203	ENST00000429738	TMEM11	P17152	192 aa		14.04	□□□□□ -0.16
MRPL28-203	ENST00000429738	RNLS	Q5VYX0	342 aa		14.04	□□□□□ -0.16
MRPL28-203	ENST00000429738	AWAT2	Q6E213	333 aa		14.04	□□□□□ -0.16
MRPL28-203	ENST00000429738	NKAIN3	Q8N8D7	197 aa		14.04	□□□□□ -0.16
MRPL28-203	ENST00000429738	TMEM104	Q8NE00	496 aa		14.04	□□□□□ -0.16
MRPL28-203	ENST00000429738	OR4X2	Q8NGF9	303 aa		14.04	□□□□□ -0.16
MRPL28-203	ENST00000429738	NEK7	Q8TDX7	302 aa		14.04	□□□□□ -0.16
MRPL28-203	ENST00000429738	CCDC107	Q8WV48	283 aa		14.04	□□□□□ -0.16
MRPL28-203	ENST00000429738		Q96M66	194 aa		14.04	□□□□□ -0.16
MRPL28-203	ENST00000429738	UQCC2	Q9BRT2	126 aa		14.04	□□□□□ -0.16
MRPL28-203	ENST00000429738	C12orf77	C9JDV5	145 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	MCRIP1	C9JLW8	97 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	CCRL2	O00421	344 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	SC5D	O75845	299 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	GAPDH	P04406	335 aa	Known RBP	14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	MGMT	P16455	207 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	MAPK3	P27361	379 aa	Predicted RBP	14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	HES1	Q14469	280 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	DEFB121	Q5J5C9	76 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	C9orf152	Q5JTZ5	239 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	SYT6	Q5T7P8	510 aa	Predicted RBP	14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	SIGIRR	Q6IA17	410 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	RAB12	Q6IQ22	244 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	UNQ9370/PRO34162	Q6UXP9	181 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	IZUMO1	Q8IYV9	350 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738		Q8N6K4	173 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	UBALD1	Q8TB05	177 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	BANF2	Q9H503	90 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	ETAA1	Q9NY74	926 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	ERGIC3	Q9Y282	383 aa		14.03	□□□□□ -0.16
MRPL28-203	ENST00000429738	IGHV3-43	A0A0B4J1X8	118 aa		14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	CA11	O75493	328 aa		14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	GLA	P06280	429 aa		14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	CDK1	P06493	297 aa		14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	IGHV3-43D	P0DP04	118 aa		14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	PF4V1	P10720	104 aa		14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	ZNF137P	P52743	207 aa		14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	GP2	P55259	537 aa	Known RBP	14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	TMEM30B	Q3MIR4	351 aa		14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	ZNF439	Q8NDP4	499 aa		14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	CYYR1	Q96J86	154 aa		14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	SELENOI	Q9C0D9	397 aa		14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	PEX16	Q9Y5Y5	336 aa		14.02	□□□□□ -0.17
MRPL28-203	ENST00000429738	PSMB11	A5LHX3	300 aa		14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	SLC31A2	O15432	143 aa		14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	IGHG2	P01859	326 aa		14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	REG1B	P48304	166 aa		14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	HNF4G	Q14541	408 aa		14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	INSL4	Q14641	139 aa		14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	C6orf183	Q5T699	404 aa		14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	SLC25A48	Q6ZT89	311 aa	Known RBP	14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	OR4K15	Q8NH41	348 aa		14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	EAF1	Q96JC9	268 aa	Predicted RBP	14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	VCX	Q9H320	206 aa		14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	RAB9B	Q9NP90	201 aa		14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	MBNL3	Q9NUK0	354 aa	Known RBP	14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	GHRL	Q9UBU3	117 aa		14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	TRAPPC2L	Q9UL33	140 aa		14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	LSM2	Q9Y333	95 aa	Known RBP	14.01	□□□□□ -0.17
MRPL28-203	ENST00000429738	IGHV3-72	A0A0B4J1Y9	119 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	ANKRD65	E5RJM6	399 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	CRTAP	O75718	401 aa	Predicted RBP	14	□□□□□ -0.17
MRPL28-203	ENST00000429738	HBZ	P02008	142 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	RCC1	P18754	421 aa	Predicted RBP	14	□□□□□ -0.17
MRPL28-203	ENST00000429738	FUT3	P21217	361 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	IL3RA	P26951	378 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	VHL	P40337	213 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	ZNF134	P52741	427 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	C6orf141	Q5SZD1	244 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	TRAT1	Q6PIZ9	186 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	MOB3B	Q86TA1	216 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	MS4A15	Q8N5U1	240 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	CHPT1	Q8WUD6	406 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	NOL4L	Q96MY1	436 aa	Predicted RBP	14	□□□□□ -0.17
MRPL28-203	ENST00000429738	WWC2-AS2	Q96NR7	200 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	MND1	Q9BWT6	205 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	DCLRE1B	Q9H816	532 aa		14	□□□□□ -0.17
MRPL28-203	ENST00000429738	NKX1-2	Q9UD57	310 aa	Predicted RBP	14	□□□□□ -0.17
MRPL28-203	ENST00000429738	WI2-2373I1.2	A0A1W2PRP0	233 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	SPINT2	O43291	252 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	CD1B	P29016	333 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	KRTAP10-11	P60412	298 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	SLC35A2	P78381	396 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	GPR50	Q13585	617 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	ACSM3	Q53FZ2	586 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	CT45A1	Q5HYN5	189 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	FAM27D1	Q5T7N8	215 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	STEAP3	Q658P3	488 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	ZNF554	Q86TJ5	538 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	ZNF329	Q86UD4	541 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	LRRTM1	Q86UE6	522 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	TGIF2LX	Q8IUE1	241 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	OR2T10	Q8NGZ9	312 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	OR1L1	Q8NH94	360 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	CT45A3	Q8NHU0	189 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	RCC1L	Q96I51	464 aa	Known RBP	13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	PLSCR3	Q9NRY6	295 aa		13.99	□□□□□ -0.17
MRPL28-203	ENST00000429738	TXNL1	O43396	289 aa		13.98	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms