RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 NDUFA2O43678 99 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FCGR3AP08637 254 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 ZNF16P17020 682 aaPredicted RBP3.29□□□□□ -1.88
LIG4-201ENST00000356922 NFYBP25208 207 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 GLP1RP43220 463 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 GNG2P59768 71 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 PAX8Q06710 450 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 RBM39Q14498 530 aaKnown RBP3.29□□□□□ -1.88
LIG4-201ENST00000356922 PRAMEF5Q5TYX0 476 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 ZNF880Q6PDB4 577 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 OR52L2PQ8NGH6 319 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 ACOT12Q8WYK0 555 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 C18orf12Q96KH6 178 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 WDFY2Q96P53 400 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 GPHA2Q96T91 129 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 DNTTIP1Q9H147 329 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 SEBOXQ9HB31 216 aaPredicted RBP3.29□□□□□ -1.88
LIG4-201ENST00000356922 TAF9BQ9HBM6 251 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 YAE1D1Q9NRH1 226 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 OR1A1Q9P1Q5 309 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 IGHV2-70DA0A0C4DH43 119 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A10PA6NDY2 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A18PA6NE21 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A16PA6NEW6 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A20PA6NIJ5 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A8PA6NJQ4 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A7PA6NKC0 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A22PA8MWA6 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A12PA8MX19 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A5PA8MXJ8 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 A8MXK9 166 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A23PA8MXZ1 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 SDCBPO00560 298 aaPredicted RBP3.29□□□□□ -1.88
LIG4-201ENST00000356922 ORC5O43913 435 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A15PP0C7V4 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A13PP0C7W8 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A14PP0C7W9 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM90A24PP0C7X0 464 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 LGALS4P56470 323 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 IL18Q14116 193 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 CR1LQ2VPA4 569 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 BRD3OSQ6XYD6 125 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 BCL6BQ8N143 479 aaPredicted RBP3.29□□□□□ -1.88
LIG4-201ENST00000356922 DYNAPQ8N1N2 210 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 ZNF565Q8N9K5 539 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 C8orf46Q8TAG6 207 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 GPX8Q8TED1 209 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 TAF15Q92804 592 aaKnown RBP eCLIP3.29□□□□□ -1.88
LIG4-201ENST00000356922 KIRREL1Q96J84 757 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 CMSS1Q9BQ75 279 aaKnown RBP3.29□□□□□ -1.88
LIG4-201ENST00000356922 PCGF1Q9BSM1 259 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 SIRPDQ9H106 197 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 Q9N2K0 584 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 AKIP1Q9NQ31 210 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 IFT46Q9NQC8 304 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 POLR3KQ9Y2Y1 108 aaPredicted RBP3.29□□□□□ -1.88
LIG4-201ENST00000356922 INSIG2Q9Y5U4 225 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 FABP12A6NFH5 140 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 B4DSR2 109 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 NPIPB11E5RHQ5 1161 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 HLA-DMAP28067 261 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 SCAND1P57086 179 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 SPANXN2Q5MJ10 180 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 DCAF12L2Q5VW00 463 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 RUSC1-AS1Q66K80 236 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 SLC35E4Q6ICL7 350 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 LHFPL4Q7Z7J7 247 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 OR10V1Q8NGI7 309 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 MRGPRFQ96AM1 343 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 TMEM186Q96B77 213 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 NUDT16L1Q9BRJ7 211 aaKnown RBP3.29□□□□□ -1.88
LIG4-201ENST00000356922 FAM234AQ9H0X4 552 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 SPACA1Q9HBV2 294 aa3.29□□□□□ -1.88
LIG4-201ENST00000356922 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.29□□□□□ -1.88
LIG4-201ENST00000356922 PLXNB1O43157 2135 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 TRGV10A0A0A0MS01 117 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 CENPVL3A0A0U1RRI6 287 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 KBTBD11-OT1A0A1B0GTJ5 212 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 FOXH1O75593 365 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 HBZP02008 142 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 ERP29P30040 261 aaKnown RBP3.28□□□□□ -1.88
LIG4-201ENST00000356922 ETV6P41212 452 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 SRSF2Q01130 221 aaKnown RBP3.28□□□□□ -1.88
LIG4-201ENST00000356922 PAX5Q02548 391 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 CD276Q5ZPR3 534 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 FAM131AQ6UXB0 335 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 RBMS3Q6XE24 437 aaKnown RBP3.28□□□□□ -1.88
LIG4-201ENST00000356922 VMO1Q7Z5L0 202 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 LINC01356Q8N9X3 169 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 OR5D13Q8NGL4 314 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 GIMAP1Q8WWP7 306 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 CORO2AQ92828 525 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 ARL11Q969Q4 196 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 C5orf30Q96GV9 206 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 SRRQ9GZT4 340 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 C7orf69Q9H7B7 122 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 GNG12Q9UBI6 72 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 FAM96BQ9Y3D0 163 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 MDFIC2A0A1B0GVS7 189 aa3.28□□□□□ -1.88
LIG4-201ENST00000356922 C17orf98A8MV24 154 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms