RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 BHLHA15Q7RTS1 189 aaPredicted RBP20.24■□□□□ 0.83
TRIM54-201ENST00000296098 SVBPQ8N300 66 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 IGSF23A1L1A6 192 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 MBD3L4A6NDZ8 208 aaPredicted RBP20.24■□□□□ 0.83
TRIM54-201ENST00000296098 MBD3L3A6NE82 208 aaPredicted RBP20.24■□□□□ 0.83
TRIM54-201ENST00000296098 FAM24AA6NFZ4 105 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 MBD3L5A6NJ08 208 aaPredicted RBP20.24■□□□□ 0.83
TRIM54-201ENST00000296098 F8W036 122 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 NUPL2O15504 423 aaKnown RBP20.24■□□□□ 0.83
TRIM54-201ENST00000296098 SPP1P10451 314 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 CEBPDP49716 269 aaPredicted RBP20.24■□□□□ 0.83
TRIM54-201ENST00000296098 VAMP2P63027 116 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 C10orf91Q5T1B1 145 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 MBD3L2Q8NHZ7 208 aaPredicted RBP20.24■□□□□ 0.83
TRIM54-201ENST00000296098 MAGT1Q9H0U3 335 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 LYRM2Q9NU23 88 aaPredicted RBP20.24■□□□□ 0.83
TRIM54-201ENST00000296098 UQCC1Q9NVA1 299 aa20.24■□□□□ 0.83
TRIM54-201ENST00000296098 CARHSP1Q9Y2V2 147 aaKnown RBP20.24■□□□□ 0.83
TRIM54-201ENST00000296098 IGHV2OR16-5A0A0B4J2B6 119 aa20.23■□□□□ 0.83
TRIM54-201ENST00000296098 SERPINE2P07093 398 aa20.23■□□□□ 0.83
TRIM54-201ENST00000296098 MUC1P15941 1255 aaPredicted RBP20.23■□□□□ 0.83
TRIM54-201ENST00000296098 RTP5Q14D33 572 aa20.23■□□□□ 0.83
TRIM54-201ENST00000296098 SPAG16Q8N0X2 631 aa20.23■□□□□ 0.83
TRIM54-201ENST00000296098 PLEKHF2Q9H8W4 249 aa20.23■□□□□ 0.83
TRIM54-201ENST00000296098 FAM96BQ9Y3D0 163 aa20.23■□□□□ 0.83
TRIM54-201ENST00000296098 IGHV1-18A0A0C4DH31 117 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 A6NLC8 198 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 DNASE2O00115 360 aaPredicted RBP20.22■□□□□ 0.83
TRIM54-201ENST00000296098 PSG2P11465 335 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 GCH1P30793 250 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 ZNF718Q3SXZ3 478 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 ZNF826PQ6ZT77 177 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 SEM1Q6ZVN7 128 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 C11orf53Q8IXP5 236 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 PRSS33Q8NF86 280 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 SLC25A31Q9H0C2 315 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 TLNRD1Q9H1K6 362 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 FZR1Q9UM11 496 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 OR5H1A6NKK0 313 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 WNT9BO14905 357 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 PITX3O75364 302 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 IGLV2-14P01704 120 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 MMP9P14780 707 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 ID3Q02535 119 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 GUCA2BQ16661 112 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 UBALD1Q8TB05 177 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 AKR1E2Q96JD6 320 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 KCNS2Q9ULS6 477 aa20.22■□□□□ 0.83
TRIM54-201ENST00000296098 RBM7Q9Y580 266 aaKnown RBP20.22■□□□□ 0.83
TRIM54-201ENST00000296098 TMEM30CPA0ZSE6 113 aa20.21■□□□□ 0.83
TRIM54-201ENST00000296098 DANCRP0C864 163 aa20.21■□□□□ 0.83
TRIM54-201ENST00000296098 ID4P47928 161 aa20.21■□□□□ 0.83
TRIM54-201ENST00000296098 FABP6P51161 128 aa20.21■□□□□ 0.83
TRIM54-201ENST00000296098 Q6ZR03 302 aa20.21■□□□□ 0.83
TRIM54-201ENST00000296098 BEND4Q6ZU67 534 aa20.21■□□□□ 0.83
TRIM54-201ENST00000296098 PUSL1Q8N0Z8 303 aaKnown RBP20.21■□□□□ 0.83
TRIM54-201ENST00000296098 LYPD6BQ8NI32 183 aa20.21■□□□□ 0.83
TRIM54-201ENST00000296098 SH3BGRL3Q9H299 93 aa20.21■□□□□ 0.83
TRIM54-201ENST00000296098 PSPNO60542 156 aa20.2■□□□□ 0.83
TRIM54-201ENST00000296098 ATF4P18848 351 aaPredicted RBP20.2■□□□□ 0.83
TRIM54-201ENST00000296098 ZNF266Q14584 549 aa20.2■□□□□ 0.83
TRIM54-201ENST00000296098 PRAMEF6Q5VXH4 476 aa20.2■□□□□ 0.83
TRIM54-201ENST00000296098 MBNL2Q5VZF2 373 aaKnown RBP20.2■□□□□ 0.83
TRIM54-201ENST00000296098 HSD17B11Q8NBQ5 300 aa20.2■□□□□ 0.83
TRIM54-201ENST00000296098 SEC11CQ9BY50 192 aa20.2■□□□□ 0.83
TRIM54-201ENST00000296098 LUZP4Q9P127 313 aa20.2■□□□□ 0.83
TRIM54-201ENST00000296098 C1QTNF9BB2RNN3 333 aa20.2■□□□□ 0.82
TRIM54-201ENST00000296098 WRBO00258 174 aa20.2■□□□□ 0.82
TRIM54-201ENST00000296098 SLC25A6P12236 298 aa20.2■□□□□ 0.82
TRIM54-201ENST00000296098 LMO1P25800 156 aa20.2■□□□□ 0.82
TRIM54-201ENST00000296098 ASCL1P50553 236 aa20.2■□□□□ 0.82
TRIM54-201ENST00000296098 WDR82Q6UXN9 313 aa20.2■□□□□ 0.82
TRIM54-201ENST00000296098 ACP7Q6ZNF0 438 aa20.2■□□□□ 0.82
TRIM54-201ENST00000296098 TMEM252Q8N6L7 170 aa20.2■□□□□ 0.82
TRIM54-201ENST00000296098 PARP12Q9H0J9 701 aaKnown RBP20.2■□□□□ 0.82
TRIM54-201ENST00000296098 KCNIP1Q9NZI2 227 aa20.2■□□□□ 0.82
TRIM54-201ENST00000296098 PPP1R3CQ9UQK1 317 aa20.2■□□□□ 0.82
TRIM54-201ENST00000296098 A0A0G2JRQ6 117 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 A0A1B0GU03 582 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 FAM74A7A6NL05 159 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 AGPAT2O15120 278 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 NXPH3O95157 252 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 OR8U9P0C7N5 309 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 EPHA1P21709 976 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 CLINT1Q14677 625 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 FAM74A3Q4VXF1 159 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 C1orf174Q8IYL3 243 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 FAM169BQ8N8A8 192 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 OR8U1Q8NH10 309 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 MSL2Q9HCI7 577 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 LIN7CQ9NUP9 197 aaKnown RBP20.19■□□□□ 0.82
TRIM54-201ENST00000296098 RNASEK-C17orf49H0YIS7 233 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 HEXAP06865 529 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 CEACAM6P40199 344 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 RAB5CP51148 216 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 Q6ZS92 163 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 RNASE11Q8TAA1 199 aaKnown RBP20.19■□□□□ 0.82
TRIM54-201ENST00000296098 GPR146Q96CH1 333 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 SLC25A15Q9Y619 301 aa20.19■□□□□ 0.82
TRIM54-201ENST00000296098 LOC400499M0QZD8 3231 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms