RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TPRX1Q8N7U7 411 aa16.86■□□□□ 0.29
VPS53-210ENST00000571456 ATG5Q9H1Y0 275 aa16.86■□□□□ 0.29
VPS53-210ENST00000571456 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.86■□□□□ 0.29
VPS53-210ENST00000571456 A0A0A6YYD4 124 aa16.85■□□□□ 0.29
VPS53-210ENST00000571456 KBTBD11-OT1A0A1B0GTJ5 212 aa16.85■□□□□ 0.29
VPS53-210ENST00000571456 SOCS1O15524 211 aa16.85■□□□□ 0.29
VPS53-210ENST00000571456 CCL3L1P16619 93 aa16.85■□□□□ 0.29
VPS53-210ENST00000571456 ZNF182P17025 639 aaPredicted RBP16.85■□□□□ 0.29
VPS53-210ENST00000571456 MRPS15P82914 257 aaKnown RBP16.85■□□□□ 0.29
VPS53-210ENST00000571456 MZT2AQ6P582 158 aa16.85■□□□□ 0.29
VPS53-210ENST00000571456 C6orf201Q7Z4U5 140 aa16.85■□□□□ 0.29
VPS53-210ENST00000571456 C11orf42Q8N5U0 333 aa16.85■□□□□ 0.29
VPS53-210ENST00000571456 ISOC1Q96CN7 298 aa16.85■□□□□ 0.29
VPS53-210ENST00000571456 SULT4A1Q9BR01 284 aa16.85■□□□□ 0.29
VPS53-210ENST00000571456 ZNF581Q9P0T4 197 aa16.85■□□□□ 0.29
VPS53-210ENST00000571456 TRBV6-6A0A0A6YYG2 114 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 A0A0B4J203 849 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 TRAV40A0A0B4J280 105 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 SMIM31A0A1B0GVY4 71 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 PAHP00439 452 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 CGB3P0DN86 165 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 CGB7P0DN87 165 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 IGHV1-8P0DP01 117 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 GLP1RP43220 463 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 UBE2E1P51965 193 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 EFNB2P52799 333 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 TMEM50BP56557 158 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 ACTG1P63261 375 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 UBE2NLQ5JXB2 153 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 OR13D1Q8NGV5 346 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 TNFRSF14Q92956 283 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 PECRQ9BY49 303 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 ABCG5Q9H222 651 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 DIABLOQ9NR28 239 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 MBNL3Q9NUK0 354 aaKnown RBP16.84■□□□□ 0.29
VPS53-210ENST00000571456 KCNIP1Q9NZI2 227 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 TRAPPC2LQ9UL33 140 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 CEPT1Q9Y6K0 416 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 SESN1Q9Y6P5 492 aa16.84■□□□□ 0.29
VPS53-210ENST00000571456 UBE2QL1A1L167 161 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 NPIPB11E5RHQ5 1161 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 NAPSAO96009 420 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 GSTP1P09211 210 aaKnown RBP16.83■□□□□ 0.28
VPS53-210ENST00000571456 HIST1H1DP16402 221 aaKnown RBP16.83■□□□□ 0.28
VPS53-210ENST00000571456 KLF17Q5JT82 389 aaPredicted RBP16.83■□□□□ 0.28
VPS53-210ENST00000571456 PRR31Q5SQ13 230 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 BRICD5Q6PL45 260 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 RTN4RL2Q86UN3 420 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 OR52M1Q8NGK5 317 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 OR13A1Q8NGR1 328 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 NDNFQ8TB73 568 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 S100A16Q96FQ6 103 aaKnown RBP16.83■□□□□ 0.28
VPS53-210ENST00000571456 ARHGAP5-AS1Q96IT6 56 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 FAAP24Q9BTP7 215 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 C12orf4Q9NQ89 552 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 SIRT7Q9NRC8 400 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 CALYQ9NYX4 217 aa16.83■□□□□ 0.28
VPS53-210ENST00000571456 IGHV1-69DA0A0B4J2H0 117 aa16.82■□□□□ 0.28
VPS53-210ENST00000571456 CENPVL3A0A0U1RRI6 287 aa16.82■□□□□ 0.28
VPS53-210ENST00000571456 H3BMQ9 156 aa16.82■□□□□ 0.28
VPS53-210ENST00000571456 VENTXO95231 258 aa16.82■□□□□ 0.28
VPS53-210ENST00000571456 IGHV1-69P01742 117 aa16.82■□□□□ 0.28
VPS53-210ENST00000571456 EPHA1P21709 976 aa16.82■□□□□ 0.28
VPS53-210ENST00000571456 PITPNAQ00169 270 aa16.82■□□□□ 0.28
VPS53-210ENST00000571456 Q3ZCU0 254 aa16.82■□□□□ 0.28
VPS53-210ENST00000571456 MIDNQ504T8 468 aa16.82■□□□□ 0.28
VPS53-210ENST00000571456 LHX4Q969G2 390 aa16.82■□□□□ 0.28
VPS53-210ENST00000571456 CMSS1Q9BQ75 279 aaKnown RBP16.82■□□□□ 0.28
VPS53-210ENST00000571456 MS4A7Q9GZW8 240 aaPredicted RBP16.82■□□□□ 0.28
VPS53-210ENST00000571456 ING3Q9NXR8 418 aa16.82■□□□□ 0.28
VPS53-210ENST00000571456 CCDC59Q9P031 241 aaKnown RBP16.82■□□□□ 0.28
VPS53-210ENST00000571456 RSL24D1Q9UHA3 163 aaKnown RBP16.82■□□□□ 0.28
VPS53-210ENST00000571456 PRKDCP78527 4128 aaKnown RBP16.82■□□□□ 0.28
VPS53-210ENST00000571456 VWFP04275 2813 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 A0A087X0M5 115 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 A0A0A6YYJ9 748 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 A0A1B0GX30 115 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 MFNGO00587 321 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 SPINT2O43291 252 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 APOA1P02647 267 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 CD3GP09693 182 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 PNLIPRP3Q17RR3 467 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 PLAC9Q5JTB6 97 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 OR5H6Q8NGV6 325 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 MRPL30Q8TCC3 161 aaKnown RBP16.81■□□□□ 0.28
VPS53-210ENST00000571456 MRGPRDQ8TDS7 321 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 SLC25A38Q96DW6 304 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 TMEM133Q9H2Q1 129 aa16.81■□□□□ 0.28
VPS53-210ENST00000571456 CHMP1AQ9HD42 196 aaPredicted RBP16.81■□□□□ 0.28
VPS53-210ENST00000571456 CCDC160A6NGH7 325 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 RNASEK-C17orf49H0YIS7 233 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 IGHV4-38-2P0DP08 117 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 CDK2P24941 298 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 CD34P28906 385 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 PLA2G7Q13093 441 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 SPCS2Q15005 226 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 SRSF7Q16629 238 aaKnown RBP eCLIP16.8■□□□□ 0.28
VPS53-210ENST00000571456 C17orf58Q2M2W7 97 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 ZNF880Q6PDB4 577 aa16.8■□□□□ 0.28
VPS53-210ENST00000571456 SAMD12Q8N8I0 201 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms