RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 APOBEC3AP31941 199 aaPredicted RBP7.51□□□□□ -1.21
VPS39-207ENST00000563692 FCGR2CP31995 323 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 PRDX2P32119 198 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 UCP3P55916 312 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 ATP5J2P56134 94 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 RAP2BP61225 183 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 HERV-K104P61576 105 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 SEC61A1P61619 476 aaKnown RBP7.51□□□□□ -1.21
VPS39-207ENST00000563692 DHODHQ02127 395 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 DHRS2Q13268 280 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 MSMPQ1L6U9 139 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 ABCA11PQ4W5N1 156 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 AADACL3Q5VUY0 350 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 OR4A4PQ8NGN8 299 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 LILRB1Q8NHL6 650 aaPredicted RBP7.51□□□□□ -1.21
VPS39-207ENST00000563692 COQ8AQ8NI60 647 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 MRPL30Q8TCC3 161 aaKnown RBP7.51□□□□□ -1.21
VPS39-207ENST00000563692 CAPSLQ8WWF8 208 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 MRGPRFQ96AM1 343 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 TMEM204Q9BSN7 226 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 GSX2Q9BZM3 304 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 MS4A5Q9H3V2 200 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 TMEM165Q9HC07 324 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 DECR2Q9NUI1 292 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 RNF7Q9UBF6 113 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 DNAJB11Q9UBS4 358 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 SLC23A1Q9UHI7 598 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 TRAPPC2LQ9UL33 140 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 PCDHB10Q9UN67 800 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 WIPI2Q9Y4P8 454 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 NPTNQ9Y639 398 aa7.51□□□□□ -1.21
VPS39-207ENST00000563692 A0A0B4J2A0 478 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 TMEM30CPA0ZSE6 113 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 RFPL4AA6NLU0 287 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 C17orf100A8MU93 164 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 SRRM5B3KS81 715 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 B9A039 149 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 RFPL4AL1F8VTS6 287 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 GOSR2O14653 212 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 SFT2D2O95562 160 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 DUS4LO95620 317 aaKnown RBP7.5□□□□□ -1.21
VPS39-207ENST00000563692 PLAUP00749 431 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 IGHV1-46P01743 117 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 CD55P08174 381 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 ADH4P08319 380 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 S100GP29377 79 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 GZMKP49863 264 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 PPP1R1AQ13522 171 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 ADIPOQQ15848 244 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 ZNF672Q499Z4 452 aaPredicted RBP7.5□□□□□ -1.21
VPS39-207ENST00000563692 ZNF660Q6AZW8 331 aaPredicted RBP7.5□□□□□ -1.21
VPS39-207ENST00000563692 SLC35E4Q6ICL7 350 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 ADAM5Q6NVV9 412 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 ZNF880Q6PDB4 577 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 ZNF497Q6ZNH5 498 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 NLRC3Q7RTR2 1065 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 MOGAT3Q86VF5 341 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 SGPP2Q8IWX5 399 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 SLC38A6Q8IZM9 456 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 ZNF565Q8N9K5 539 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 CCDC71LQ8N9Z2 235 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 ADAD2Q8NCV1 583 aaKnown RBP7.5□□□□□ -1.21
VPS39-207ENST00000563692 OR5T2Q8NGG2 359 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 OR10J5Q8NHC4 309 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 MITD1Q8WV92 249 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 ITLN1Q8WWA0 313 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 ZNF486Q96H40 463 aaPredicted RBP7.5□□□□□ -1.21
VPS39-207ENST00000563692 Q96MF0 132 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 VRK1Q99986 396 aaPredicted RBP7.5□□□□□ -1.21
VPS39-207ENST00000563692 RTBDNQ9BSG5 229 aaPredicted RBP7.5□□□□□ -1.21
VPS39-207ENST00000563692 CHIAQ9BZP6 476 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 C5orf66Q9H5L9 145 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 DLL4Q9NR61 685 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 SHPKQ9UHJ6 478 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 LAMP3Q9UQV4 416 aa7.5□□□□□ -1.21
VPS39-207ENST00000563692 ACANP16112 2415 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 TEX13DA0A0J9YY54 714 aaPredicted RBP7.49□□□□□ -1.21
VPS39-207ENST00000563692 M0R233 179 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 WNT9BO14905 357 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 BET1O15155 118 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 RGS11O94810 467 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 OR2A4O95047 310 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 LHBP01229 141 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 SCTP09683 121 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 HLA-GP17693 338 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 C4BPBP20851 252 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 HLA-DRB3P79483 266 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 CYCSP99999 105 aaKnown RBP7.49□□□□□ -1.21
VPS39-207ENST00000563692 COL10A1Q03692 680 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 FGL1Q08830 312 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 KCNJ8Q15842 424 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 FAM209AQ5JX71 171 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 TRAT1Q6PIZ9 186 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 CLEC9AQ6UXN8 241 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 C17orf107Q6ZR85 190 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 FAM185AQ8N0U4 392 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 C1orf87Q8N0U7 546 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 GAPTQ8N292 157 aa7.49□□□□□ -1.21
VPS39-207ENST00000563692 BOLLQ8N9W6 283 aaKnown RBP7.49□□□□□ -1.21
VPS39-207ENST00000563692 OR5D13Q8NGL4 314 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms