RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 UPK1BO75841 260 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 RBBP9O75884 186 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 CLDN14O95500 239 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 PAHP00439 452 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 NGFP01138 241 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 IGHV3-13P01766 116 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 GLAP06280 429 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 CCL2P13500 99 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 ZNF250P15622 560 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 ELK1P19419 428 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 FAUP35544 74 aaKnown RBP4.31□□□□□ -1.72
LDLR-209ENST00000558528 PMELP40967 661 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 CBX5P45973 191 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 OR3A1P47881 315 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 OR3A3P47888 321 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 ZNF83P51522 516 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 KLF3P57682 345 aaPredicted RBP4.31□□□□□ -1.72
LDLR-209ENST00000558528 MRPS15P82914 257 aaKnown RBP4.31□□□□□ -1.72
LDLR-209ENST00000558528 PNRC1Q12796 327 aaPredicted RBP4.31□□□□□ -1.72
LDLR-209ENST00000558528 PRDX4Q13162 271 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 P2RY14Q15391 338 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 RSU1Q15404 277 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 TSC22D1Q15714 1073 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 OR2T2Q6IF00 324 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 ASCL4Q6XD76 172 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 LYPD6Q86Y78 171 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 OR5AS1Q8N127 324 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 Q8N402 240 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 RPRMLQ8N4K4 120 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 THAP8Q8NA92 274 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 RELL2Q8NC24 303 aaPredicted RBP4.31□□□□□ -1.72
LDLR-209ENST00000558528 OR4A16Q8NH70 328 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 OR2AE1Q8NHA4 323 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 SLC25A40Q8TBP6 338 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 LGALS14Q8TCE9 139 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 KLF14Q8TD94 323 aaPredicted RBP4.31□□□□□ -1.72
LDLR-209ENST00000558528 TNFAIP8L1Q8WVP5 186 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 PINX1Q96BK5 328 aaKnown RBP4.31□□□□□ -1.72
LDLR-209ENST00000558528 LURAP1Q96LR2 239 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 ZNF48Q96MX3 618 aaPredicted RBP4.31□□□□□ -1.72
LDLR-209ENST00000558528 SOSTQ9BQB4 213 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 C1QTNF6Q9BXI9 259 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 TMEM59Q9BXS4 323 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 OR2J1Q9GZK6 312 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 ATG5Q9H1Y0 275 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 CXXC4Q9H2H0 198 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 SLA2Q9H6Q3 261 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 ELL3Q9HB65 397 aaPredicted RBP4.31□□□□□ -1.72
LDLR-209ENST00000558528 SPACA1Q9HBV2 294 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 NOX3Q9HBY0 568 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 RHBDL2Q9NX52 303 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 IL36GQ9NZH8 169 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 IL36RNQ9UBH0 155 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 ZNF107Q9UII5 783 aaPredicted RBP4.31□□□□□ -1.72
LDLR-209ENST00000558528 POU2F3Q9UKI9 436 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 RHBDD3Q9Y3P4 386 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 MXRA5Q9NR99 2828 aa4.31□□□□□ -1.72
LDLR-209ENST00000558528 IGKV1-9A0A0C4DH69 117 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 TMEM272A0A1B0GTI8 110 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 A0A1W2PP11 408 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 PQLC2LA1A4F0 135 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 LRP5LA4QPB2 252 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 SERPINE3A8MV23 424 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 TMEM14DPA8MWL7 114 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 ZNF732B4DXR9 585 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 CHEK1O14757 476 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 GSTZ1O43708 216 aaPredicted RBP4.3□□□□□ -1.72
LDLR-209ENST00000558528 CA11O75493 328 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 CTAG2O75638 210 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 IFNA2P01563 188 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 MELTFP08582 738 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 ACKR3P25106 362 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 PRSS3P35030 304 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 SRP9P49458 86 aaKnown RBP4.3□□□□□ -1.72
LDLR-209ENST00000558528 FABP6P51161 128 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 CD81P60033 236 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 ACTBP60709 375 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 ACTG1P63261 375 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 PSG7Q13046 419 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 OR8G1Q15617 311 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 MPV17LQ2QL34 196 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 FAM76BQ5HYJ3 339 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 Q5PR19 223 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 ELP2Q6IA86 826 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 FAM159AQ6UWV7 190 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 Q6YL49 198 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 Q6ZTK2 550 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 RFPL4BQ6ZWI9 263 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 NR2C2APQ86WQ0 139 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 STHQ8IWL8 128 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 OSR2Q8N2R0 312 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 TOMM5Q8N4H5 51 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 OR4M1Q8NGD0 313 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 OR4D6Q8NGJ1 314 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 OR51T1Q8NGJ9 327 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 OR5H6Q8NGV6 325 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 OR51F2Q8NH61 342 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 FAM222BQ8WU58 562 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 OR5P3Q8WZ94 311 aa4.3□□□□□ -1.72
LDLR-209ENST00000558528 MRPL24Q96A35 216 aaKnown RBP4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms