RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, human

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTF1-204	ENST00000558117	AZU1	P20160	251 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	GTF2E2	P29084	291 aa	Known RBP	4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	HTR2B	P41595	481 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	KLF3	P57682	345 aa	Predicted RBP	4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	IL5RA	Q01344	420 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	RIPPLY1	Q0D2K3	151 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	CD226	Q15762	336 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	TOMM34	Q15785	309 aa	Predicted RBP	4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	TRMT5	Q32P41	509 aa	Known RBP	4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	RNLS	Q5VYX0	342 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	CGB2	Q6NT52	195 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	RNF175	Q8N4F7	328 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	DHRSX	Q8N5I4	330 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	FAM86B1	Q8N7N1	296 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	ZIC4	Q8N9L1	334 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	PROKR2	Q8NFJ6	384 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	OR4F6	Q8NGB9	312 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	OR9G4	Q8NGQ1	327 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	RHOXF1	Q8NHV9	184 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	SLC7A13	Q8TCU3	470 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	GEMIN6	Q8WXD5	167 aa	Known RBP	4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	UBE2E3	Q969T4	207 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	CMTM7	Q96FZ5	175 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	AURKB	Q96GD4	344 aa	Predicted RBP	4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	PLEKHA8	Q96JA3	519 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	MAGEB18	Q96M61	343 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	MRPL57	Q9BQC6	102 aa	Known RBP	4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	CDCA4	Q9BXL8	241 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	GAL3ST2	Q9H3Q3	398 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	CD274	Q9NZQ7	290 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	ZNF581	Q9P0T4	197 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	FIS1	Q9Y3D6	152 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117	FBXO7	Q9Y3I1	522 aa		4.16	□□□□□ -1.74
RTF1-204	ENST00000558117		A8MT66	165 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	ANKRD65	E5RJM6	399 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	SULT2B1	O00204	365 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	BIRC5	O15392	142 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	EDF1	O60869	148 aa	Known RBP	4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	SMIM24	O75264	130 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	OXSR1	O95747	527 aa	Predicted RBP	4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	IGKV1D-16	P01601	117 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	SERPINE1	P05121	402 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	RBP1	P09455	135 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	PRPS2	P11908	318 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	CSNK2A2	P19784	350 aa	Predicted RBP	4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	MYCNOS	P40205	109 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	RAP1GDS1	P52306	607 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	SLC18A1	P54219	525 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	H3F3A	P84243	136 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	RAB40B	Q12829	278 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	COTL1	Q14019	142 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	CCDC153	Q494R4	210 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	VPS26B	Q4G0F5	336 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	UNC50	Q53HI1	259 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	NHLRC3	Q5JS37	347 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	ZNF506	Q5JVG8	444 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	WDR25	Q64LD2	544 aa	Predicted RBP	4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	C19orf35	Q6ZS72	473 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	FRA10AC1	Q70Z53	315 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	UTS2B	Q765I0	119 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	ERI1	Q8IV48	349 aa	Known RBP	4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	SLC35F2	Q8IXU6	374 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	ZNF781	Q8N8C0	355 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	OR51D1	Q8NGF3	324 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	OR4A15	Q8NGL6	344 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	OR13C9	Q8NGT0	318 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	SYNPR	Q8TBG9	265 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	LRRC20	Q8TCA0	184 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	ZNF675	Q8TD23	568 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	SDSL	Q96GA7	329 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	ZNF681	Q96N22	645 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	CNN2	Q99439	309 aa	Known RBP	4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	ZNF649	Q9BS31	505 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	EFCAB11	Q9BUY7	163 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	GLIPR2	Q9H4G4	154 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	NIPAL2	Q9H841	368 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	CCNB1IP1	Q9NPC3	277 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	B3GNT2	Q9NY97	397 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	CD300A	Q9UGN4	299 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	ZNF107	Q9UII5	783 aa	Predicted RBP	4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	MGAT4A	Q9UM21	535 aa		4.15	□□□□□ -1.75
RTF1-204	ENST00000558117	TANC2	Q9HCD6	1990 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117		A0A0G2JND7	137 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	CCDC182	A6NF36	153 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	NUPR2	A6NF83	97 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117		A8MU10	97 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	ZNF99	A8MXY4	864 aa	Predicted RBP	4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	SUPT7L	O94864	414 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	FAM107A	O95990	144 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	DNAH10OS	P0CZ25	163 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	CCL2	P13500	99 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	POU3F4	P49335	361 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	AQP5	P55064	265 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	ATP6V0D1	P61421	351 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	ERVS71-1	P61550	626 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	ZNF85	Q03923	595 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	GLO1	Q04760	184 aa		4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	EIF2B1	Q14232	305 aa	Known RBP	4.14	□□□□□ -1.75
RTF1-204	ENST00000558117	GPR176	Q14439	515 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms