RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 RFNGQ9Y644 331 aa13.95□□□□□ -0.18
SHMT2-231ENST00000557433 HS3ST3B1Q9Y662 390 aa13.95□□□□□ -0.18
SHMT2-231ENST00000557433 IGKV1D-13A0A0B4J2D9 117 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 LY6G6EA0A0G2JKS1 128 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 TRGC2P03986 189 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 IGKV1-13P0DP09 117 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 BCL3P20749 454 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 HAAOP46952 286 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 HERPUD1Q15011 391 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 PDCD1Q15116 288 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 OR2T2Q6IF00 324 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 SPNS3Q6ZMD2 512 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 GGNQ86UU5 652 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 THNSL2Q86YJ6 484 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 REPIN1Q9BWE0 567 aaKnown RBP13.94□□□□□ -0.18
SHMT2-231ENST00000557433 GNG13Q9P2W3 67 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 URGCP-MRPS24S4R325 110 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 U3KQA8 63 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 CDH23Q9H251 3354 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 SERPINE2P07093 398 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 UMODP07911 640 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 CELA2AP08217 269 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 COX5BP10606 129 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 PKIAP61925 76 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 RPS18P62269 152 aaKnown RBP13.94□□□□□ -0.18
SHMT2-231ENST00000557433 RAB11AP62491 216 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 CEACAM21Q3KPI0 293 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 ZNF787Q6DD87 383 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 MRGPRGQ86SM5 289 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 AGBL5Q8NDL9 886 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 ADGRG7Q96K78 797 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 PRDM13Q9H4Q3 707 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 SDF2L1Q9HCN8 221 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 UFSP2Q9NUQ7 469 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 VAX2Q9UIW0 290 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 PITPNC1Q9UKF7 332 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 OR2W1Q9Y3N9 320 aa13.94□□□□□ -0.18
SHMT2-231ENST00000557433 SHANK1Q9Y566 2161 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 DNAH14Q0VDD8 3507 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 NPIPB11E5RHQ5 1161 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 TRAPPC2LH3BP13 241 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 P04436 131 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 PATE4P0C8F1 98 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 NTF4P34130 210 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 HBG1P69891 147 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 HBG2P69892 147 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 PRDX4Q13162 271 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 ZDHHC23Q8IYP9 409 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 OR5R1Q8NH85 324 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 AGMATQ9BSE5 352 aa13.93□□□□□ -0.18
SHMT2-231ENST00000557433 KIAA1324LA8MWY0 1029 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-231ENST00000557433 CYTIPO60759 359 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 TRGC1P0CF51 173 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 GPX4P36969 197 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-231ENST00000557433 PRSS12P56730 875 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 C9orf152Q5JTZ5 239 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 GPR146Q96CH1 333 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 CABLES2Q9BTV7 478 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 LINC00470Q9BZP3 86 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 OCIAD1Q9NX40 245 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 TSTD3H0UI37 97 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 DEGS1O15121 323 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 CXCL13O43927 109 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 IGHEP01854 428 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 SOD3P08294 240 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 ZNF880Q6PDB4 577 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 OR56B2PQ8NGI1 322 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 OR5A2Q8NGI9 324 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 OR2Y1Q8NGV0 311 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 FGFBP3Q8TAT2 258 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 NEK7Q8TDX7 302 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 CA5BP1Q8WTZ4 195 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 AKIRIN1Q9H9L7 192 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-231ENST00000557433 RPRMQ9NS64 109 aa13.92□□□□□ -0.18
SHMT2-231ENST00000557433 G3V3Y1 287 aa13.91□□□□□ -0.18
SHMT2-231ENST00000557433 LRRC75BQ2VPJ9 315 aa13.91□□□□□ -0.18
SHMT2-231ENST00000557433 ZNF324BQ6AW86 544 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-231ENST00000557433 PCSK4Q6UW60 755 aa13.91□□□□□ -0.18
SHMT2-231ENST00000557433 P4HA3Q7Z4N8 544 aa13.91□□□□□ -0.18
SHMT2-231ENST00000557433 OR10D3Q8NH80 312 aa13.91□□□□□ -0.18
SHMT2-231ENST00000557433 OR10J5Q8NHC4 309 aa13.91□□□□□ -0.18
SHMT2-231ENST00000557433 ABHD5Q8WTS1 349 aa13.91□□□□□ -0.18
SHMT2-231ENST00000557433 FRZBQ92765 325 aa13.91□□□□□ -0.18
SHMT2-231ENST00000557433 CLDN23Q96B33 292 aa13.91□□□□□ -0.18
SHMT2-231ENST00000557433 GPR61Q9BZJ8 451 aa13.91□□□□□ -0.18
SHMT2-231ENST00000557433 LRFN1Q9P244 771 aa13.91□□□□□ -0.18
SHMT2-231ENST00000557433 TIMM9Q9Y5J7 89 aa13.91□□□□□ -0.18
SHMT2-231ENST00000557433 IGKV1-6A0A0C4DH72 117 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 PHOX2AO14813 284 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 SYNGR2O43760 224 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 KLF7O75840 302 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-231ENST00000557433 TRA2AQ13595 282 aaKnown RBP eCLIP13.9□□□□□ -0.18
SHMT2-231ENST00000557433 LBHQ53QV2 105 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-231ENST00000557433 TMEM41BQ5BJD5 291 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 DBX2Q6ZNG2 339 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 MRPL21Q7Z2W9 205 aaKnown RBP13.9□□□□□ -0.18
SHMT2-231ENST00000557433 REC114Q7Z4M0 266 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 ZNF525Q8N782 197 aa13.9□□□□□ -0.18
SHMT2-231ENST00000557433 MRPL30Q8TCC3 161 aaKnown RBP13.9□□□□□ -0.18
SHMT2-231ENST00000557433 APOBEC3DQ96AK3 386 aaPredicted RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms