RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 FAM25CB3EWG5 89 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 FAM25GB3EWG6 89 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 C12orf77C9JDV5 145 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 M0R1W7 72 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 CA11O75493 328 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 SCGNO76038 276 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 HLA-DQB1P01920 261 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 TAS2R20P59543 309 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 GUCA2AQ02747 115 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 CNPY1Q3B7I2 92 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 KLF17Q5JT82 389 aaPredicted RBP10.5□□□□□ -0.73
SHMT2-227ENST00000557269 TMEM69Q5SWH9 247 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 FAM120AOSQ5T036 256 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 HACD4Q5VWC8 232 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 HCP5Q6MZN7 132 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 ZNF880Q6PDB4 577 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 CNIH2Q6PI25 160 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 NUDCD2Q8WVJ2 157 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 GCDHQ92947 438 aaPredicted RBP10.5□□□□□ -0.73
SHMT2-227ENST00000557269 TNFRSF14Q92956 283 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 PHF21AQ96BD5 680 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 UPRTQ96BW1 309 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 DMRTB1Q96MA1 342 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 CHMP1AQ9HD42 196 aaPredicted RBP10.5□□□□□ -0.73
SHMT2-227ENST00000557269 C12orf4Q9NQ89 552 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 MBNL3Q9NUK0 354 aaKnown RBP10.5□□□□□ -0.73
SHMT2-227ENST00000557269 TAS2R3Q9NYW6 316 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 CALYQ9NYX4 217 aa10.5□□□□□ -0.73
SHMT2-227ENST00000557269 TRBV6-6A0A0A6YYG2 114 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 KBTBD11-OT1A0A1B0GTJ5 212 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 ZNF729A6NN14 1252 aaPredicted RBP10.49□□□□□ -0.73
SHMT2-227ENST00000557269 NPIPB11E5RHQ5 1161 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 MELTFP08582 738 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 GSTP1P09211 210 aaKnown RBP10.49□□□□□ -0.73
SHMT2-227ENST00000557269 CD3GP09693 182 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 IGHV1-8P0DP01 117 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 TNFSF8P32971 234 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 KLRD1Q13241 179 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 ARFRP1Q13795 201 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 METTL11BQ5VVY1 283 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 ZNF782Q6ZMW2 699 aaPredicted RBP10.49□□□□□ -0.73
SHMT2-227ENST00000557269 C1orf122Q6ZSJ8 110 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 PDZD9Q8IXQ8 264 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 ZNF565Q8N9K5 539 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 OR1L1Q8NH94 360 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 SETD6Q8TBK2 473 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 MAFIPQ8WZ33 124 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 MMP27Q9H306 513 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 LINC00574Q9H8X3 128 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 Q9N2K0 584 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 EXTL2Q9UBQ6 330 aa10.49□□□□□ -0.73
SHMT2-227ENST00000557269 MRPS7Q9Y2R9 242 aaKnown RBP10.49□□□□□ -0.73
SHMT2-227ENST00000557269 IGKV1D-8A0A087WSZ0 117 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 A0A1W2PPH5 198 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 MEIOCA2RUB1 952 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 FAM172BPA6NC97 362 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 INAFM1C9JVW0 142 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 RNASEK-C17orf49H0YIS7 233 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 ORC5O43913 435 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 FSHBP01225 129 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 FCGR3AP08637 254 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 IGHV4-38-2P0DP08 117 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 HOXB4P17483 251 aaPredicted RBP10.48□□□□□ -0.73
SHMT2-227ENST00000557269 GZMHP20718 246 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 PRTN3P24158 256 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 LTC4SQ16873 150 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 PNLIPRP3Q17RR3 467 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 PNKDQ8N490 385 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 PRR18Q8N4B5 295 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 ARL11Q969Q4 196 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 KIRREL1Q96J84 757 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 ABHD1Q96SE0 405 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 GAL3ST2Q9H3Q3 398 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 RIMS4Q9H426 269 aaPredicted RBP10.48□□□□□ -0.73
SHMT2-227ENST00000557269 METTL8Q9H825 291 aaKnown RBP10.48□□□□□ -0.73
SHMT2-227ENST00000557269 TAF9BQ9HBM6 251 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 SOX21Q9Y651 276 aaPredicted RBP10.48□□□□□ -0.73
SHMT2-227ENST00000557269 A3GALT2U3KPV4 340 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 ANK3Q12955 4377 aaKnown RBP10.48□□□□□ -0.73
SHMT2-227ENST00000557269 KIAA2026Q5HYC2 2103 aa10.48□□□□□ -0.73
SHMT2-227ENST00000557269 WNK2Q9Y3S1 2297 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 TLN2Q9Y4G6 2542 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 CENPVL3A0A0U1RRI6 287 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 MEIS3P1A6NDR6 274 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 CLPXO76031 633 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 IGHV3-7P01780 117 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 HBZP02008 142 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 RBP4P02753 201 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 FCER2P06734 321 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 SCTP09683 121 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 GNG2P59768 71 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 ARL6IP1Q15041 203 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 HMGN3Q15651 99 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 C6orf183Q5T699 404 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 HEPN1Q6WQI6 88 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 SNX29P2Q8IUI4 249 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 OR6Q1Q8NGQ2 317 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 LEAP2Q969E1 77 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 LHX4Q969G2 390 aa10.47□□□□□ -0.73
SHMT2-227ENST00000557269 DIRAS2Q96HU8 199 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms