RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 CORO2AQ92828 525 aa11.53□□□□□ -0.56
VIPAS39-208ENST00000556412 LHX4Q969G2 390 aa11.53□□□□□ -0.56
VIPAS39-208ENST00000556412 ARL11Q969Q4 196 aa11.53□□□□□ -0.56
VIPAS39-208ENST00000556412 RIMS4Q9H426 269 aaPredicted RBP11.53□□□□□ -0.56
VIPAS39-208ENST00000556412 NCOR1P1Q9H4R4 102 aa11.53□□□□□ -0.56
VIPAS39-208ENST00000556412 AUNIPQ9H7T9 357 aa11.53□□□□□ -0.56
VIPAS39-208ENST00000556412 TAS2R3Q9NYW6 316 aa11.53□□□□□ -0.56
VIPAS39-208ENST00000556412 CR1P17927 2039 aa11.52□□□□□ -0.56
VIPAS39-208ENST00000556412 KBTBD11-OT1A0A1B0GTJ5 212 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 FAM172BPA6NC97 362 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 ZNF729A6NN14 1252 aaPredicted RBP11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 NAPSAO96009 420 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 GZMHP20718 246 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 COX7A1P24310 79 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 NFYBP25208 207 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 DLX6P56179 175 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 CNIH2Q6PI25 160 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 GAPTQ8N292 157 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 MAFIPQ8WZ33 124 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 GCDHQ92947 438 aaPredicted RBP11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 DIRAS2Q96HU8 199 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 DMRTB1Q96MA1 342 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 TBX15Q96SF7 602 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 NXF2Q9GZY0 626 aaKnown RBP11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 MMP27Q9H306 513 aa11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 ZNF230Q9UIE0 474 aaPredicted RBP11.52□□□□□ -0.57
VIPAS39-208ENST00000556412 TRAV40A0A0B4J280 105 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 A0A1W2PRD5 423 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 A0A1W2PRF3 423 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 A0A1W2PRM7 423 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 C17orf98A8MV24 154 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 C12orf77C9JDV5 145 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 MMP23AO75900 390 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 FCER2P06734 321 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 IGHV1-8P0DP01 117 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 MMP9P14780 707 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 HNF1AP20823 631 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 S100A5P33763 92 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 SRP14P37108 136 aaKnown RBP11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 KLRD1Q13241 179 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 C17orf58Q2M2W7 97 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 CNPY1Q3B7I2 92 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 C1orf229Q6ZS94 237 aaPredicted RBP11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 C5orf24Q7Z6I8 188 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 SUCNR1Q9BXA5 334 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 TAF9BQ9HBM6 251 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 HIVEP1P15822 2718 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 MEIS3P1A6NDR6 274 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 INAFM1C9JVW0 142 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 SPINT2O43291 252 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 FCGR3AP08637 254 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 GUCA2AQ02747 115 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 PNLIPRP3Q17RR3 467 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 RNASE12Q5GAN4 147 aaKnown RBP11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 TRAT1Q6PIZ9 186 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 Q6ZPA2 131 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 MOB1BQ7L9L4 216 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 C11orf42Q8N5U0 333 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 OR1L1Q8NH94 360 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 IL1F10Q8WWZ1 152 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 UPRTQ96BW1 309 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 ST6GALNAC5Q9BVH7 336 aa11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 MBNL3Q9NUK0 354 aaKnown RBP11.51□□□□□ -0.57
VIPAS39-208ENST00000556412 MALRD1Q5VYJ5 2156 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 IGHV3-7P01780 117 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 HBZP02008 142 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 PRTN3P24158 256 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 GDNFP39905 211 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 PITPNAQ00169 270 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 BAIAP2L2Q6UXY1 529 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 HEPN1Q6WQI6 88 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 C1orf122Q6ZSJ8 110 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 NANPQ8TBE9 248 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 BEX2Q9BXY8 128 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 Q9N2K0 584 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 IDI2-AS1Q9NZ38 188 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 SESN1Q9Y6P5 492 aa11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 ZNF469Q96JG9 3925 aaPredicted RBP11.5□□□□□ -0.57
VIPAS39-208ENST00000556412 ZANQ9Y493 2812 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 IGHV3-43A0A0B4J1X8 118 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 C15orf65H3BRN8 121 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 SDCBPO00560 298 aaPredicted RBP11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 ORC5O43913 435 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 SSX5O60225 188 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 HLA-DQB1P01920 261 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 RBP4P02753 201 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 CGB3P0DN86 165 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 CGB7P0DN87 165 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 IGHV3-43DP0DP04 118 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 IGHV4-38-2P0DP08 117 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 HOXB4P17483 251 aaPredicted RBP11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 TNFSF8P32971 234 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 PRSS3P35030 304 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 IL18Q14116 193 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 GPR157Q5UAW9 335 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 NCR3LG1Q68D85 454 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 PNKDQ8N490 385 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 LEAP2Q969E1 77 aa11.49□□□□□ -0.57
VIPAS39-208ENST00000556412 KIRREL1Q96J84 757 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms