RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SECTM1Q8WVN6 248 aa22.19■■□□□ 1.14
CCDC88C-205ENST00000553403 DMRTA2Q96SC8 542 aa22.19■■□□□ 1.14
CCDC88C-205ENST00000553403 SEBOXQ9HB31 216 aaPredicted RBP22.19■■□□□ 1.14
CCDC88C-205ENST00000553403 HEATR1Q9H583 2144 aaKnown RBP22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 TMEM30CPA0ZSE6 113 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 TUBAL3A6NHL2 446 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 B3GALNT1O75752 331 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 AP2S1P53680 142 aaPredicted RBP22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 ATXN7L3Q14CW9 347 aaPredicted RBP22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 HMGN3Q15651 99 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 SP6Q3SY56 376 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 GGNBP1Q5YKI7 109 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 SLC35E4Q6ICL7 350 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 PRSS54Q6PEW0 395 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 VHLLQ6RSH7 139 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 FAM90A1Q86YD7 464 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 LRRC29Q8WV35 223 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 MSI2Q96DH6 328 aaKnown RBP22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 KIRREL1Q96J84 757 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 C18orf12Q96KH6 178 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 FBXO9Q9UK97 447 aaPredicted RBP22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 OR2W1Q9Y3N9 320 aa22.18■■□□□ 1.14
CCDC88C-205ENST00000553403 PET100P0DJ07 73 aa22.17■■□□□ 1.14
CCDC88C-205ENST00000553403 CEBPDP49716 269 aaPredicted RBP22.17■■□□□ 1.14
CCDC88C-205ENST00000553403 SRPXP78539 464 aa22.17■■□□□ 1.14
CCDC88C-205ENST00000553403 CLLU1Q5K131 121 aa22.17■■□□□ 1.14
CCDC88C-205ENST00000553403 GLYATL2Q8WU03 294 aa22.17■■□□□ 1.14
CCDC88C-205ENST00000553403 MRPL24Q96A35 216 aaKnown RBP22.17■■□□□ 1.14
CCDC88C-205ENST00000553403 MEGF10Q96KG7 1140 aa22.17■■□□□ 1.14
CCDC88C-205ENST00000553403 IGKV1D-13A0A0B4J2D9 117 aa22.17■■□□□ 1.14
CCDC88C-205ENST00000553403 PSPNO60542 156 aa22.17■■□□□ 1.14
CCDC88C-205ENST00000553403 IGKV1-13P0DP09 117 aa22.17■■□□□ 1.14
CCDC88C-205ENST00000553403 KLRB1Q12918 225 aa22.17■■□□□ 1.14
CCDC88C-205ENST00000553403 IAH1Q2TAA2 248 aaPredicted RBP22.17■■□□□ 1.14
CCDC88C-205ENST00000553403 SHANK1Q9Y566 2161 aa22.16■■□□□ 1.14
CCDC88C-205ENST00000553403 C3orf85A0A1B0GTC6 90 aa22.16■■□□□ 1.14
CCDC88C-205ENST00000553403 KANTRA0A1W2PQU2 76 aa22.16■■□□□ 1.14
CCDC88C-205ENST00000553403 SRRM5B3KS81 715 aa22.16■■□□□ 1.14
CCDC88C-205ENST00000553403 H0YIZ8 118 aa22.16■■□□□ 1.14
CCDC88C-205ENST00000553403 PHF1O43189 567 aaPredicted RBP22.16■■□□□ 1.14
CCDC88C-205ENST00000553403 BCL2L11O43521 198 aa22.16■■□□□ 1.14
CCDC88C-205ENST00000553403 ZNF818PQ6ZRF7 136 aa22.16■■□□□ 1.14
CCDC88C-205ENST00000553403 DCUN1D4Q92564 292 aa22.16■■□□□ 1.14
CCDC88C-205ENST00000553403 MRPL37Q9BZE1 423 aaKnown RBP22.16■■□□□ 1.14
CCDC88C-205ENST00000553403 LINC00862A6NCI5 91 aa22.15■■□□□ 1.14
CCDC88C-205ENST00000553403 UBA52P62987 128 aaKnown RBP22.15■■□□□ 1.14
CCDC88C-205ENST00000553403 TBC1D26Q86UD7 250 aa22.15■■□□□ 1.14
CCDC88C-205ENST00000553403 LILRB1Q8NHL6 650 aaPredicted RBP22.15■■□□□ 1.14
CCDC88C-205ENST00000553403 OR2V2Q96R30 315 aa22.15■■□□□ 1.14
CCDC88C-205ENST00000553403 GSKIPQ9P0R6 139 aa22.15■■□□□ 1.14
CCDC88C-205ENST00000553403 RPS10-NUDT3A0A1W2PQS6 291 aa22.14■■□□□ 1.14
CCDC88C-205ENST00000553403 PRB1P04280 392 aa22.14■■□□□ 1.14
CCDC88C-205ENST00000553403 RAB14P61106 215 aa22.14■■□□□ 1.14
CCDC88C-205ENST00000553403 RAB32Q13637 225 aa22.14■■□□□ 1.14
CCDC88C-205ENST00000553403 WFDC8Q8IUA0 241 aa22.14■■□□□ 1.14
CCDC88C-205ENST00000553403 TP53RKQ96S44 253 aa22.14■■□□□ 1.14
CCDC88C-205ENST00000553403 GSX2Q9BZM3 304 aa22.14■■□□□ 1.14
CCDC88C-205ENST00000553403 CCL28Q9NRJ3 127 aa22.14■■□□□ 1.14
CCDC88C-205ENST00000553403 ZGRF1Q86YA3 2104 aa22.14■■□□□ 1.13
CCDC88C-205ENST00000553403 THBDP07204 575 aa22.14■■□□□ 1.13
CCDC88C-205ENST00000553403 CASP6P55212 293 aa22.14■■□□□ 1.13
CCDC88C-205ENST00000553403 ESCO2Q56NI9 601 aa22.14■■□□□ 1.13
CCDC88C-205ENST00000553403 CMTM1Q8IZ96 169 aa22.14■■□□□ 1.13
CCDC88C-205ENST00000553403 SCARB1Q8WTV0 552 aa22.14■■□□□ 1.13
CCDC88C-205ENST00000553403 TMEM222Q9H0R3 208 aa22.14■■□□□ 1.13
CCDC88C-205ENST00000553403 KCNIP1Q9NZI2 227 aa22.14■■□□□ 1.13
CCDC88C-205ENST00000553403 DNAJB11Q9UBS4 358 aa22.14■■□□□ 1.13
CCDC88C-205ENST00000553403 MGAQ8IWI9 3026 aa22.13■■□□□ 1.13
CCDC88C-205ENST00000553403 TRAV39A0A0B4J263 110 aa22.13■■□□□ 1.13
CCDC88C-205ENST00000553403 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP22.13■■□□□ 1.13
CCDC88C-205ENST00000553403 S100GP29377 79 aa22.13■■□□□ 1.13
CCDC88C-205ENST00000553403 GATA4P43694 442 aa22.13■■□□□ 1.13
CCDC88C-205ENST00000553403 OR3A1P47881 315 aa22.13■■□□□ 1.13
CCDC88C-205ENST00000553403 PAX5Q02548 391 aa22.13■■□□□ 1.13
CCDC88C-205ENST00000553403 COL10A1Q03692 680 aa22.13■■□□□ 1.13
CCDC88C-205ENST00000553403 OR10V1Q8NGI7 309 aa22.13■■□□□ 1.13
CCDC88C-205ENST00000553403 TAF9BQ9HBM6 251 aa22.13■■□□□ 1.13
CCDC88C-205ENST00000553403 TMED3Q9Y3Q3 217 aa22.13■■□□□ 1.13
CCDC88C-205ENST00000553403 HSD17B6O14756 317 aa22.12■■□□□ 1.13
CCDC88C-205ENST00000553403 SPRY3O43610 288 aa22.12■■□□□ 1.13
CCDC88C-205ENST00000553403 NUP62P37198 522 aaPredicted RBP22.12■■□□□ 1.13
CCDC88C-205ENST00000553403 LYZL2Q7Z4W2 148 aa22.12■■□□□ 1.13
CCDC88C-205ENST00000553403 BVESQ8NE79 360 aa22.12■■□□□ 1.13
CCDC88C-205ENST00000553403 IL1F10Q8WWZ1 152 aa22.12■■□□□ 1.13
CCDC88C-205ENST00000553403 TMEM56Q96MV1 263 aa22.12■■□□□ 1.13
CCDC88C-205ENST00000553403 OR5AC2Q9NZP5 309 aa22.12■■□□□ 1.13
CCDC88C-205ENST00000553403 OR1A1Q9P1Q5 309 aa22.12■■□□□ 1.13
CCDC88C-205ENST00000553403 ERRFI1Q9UJM3 462 aaPredicted RBP22.12■■□□□ 1.13
CCDC88C-205ENST00000553403 TMEM56-RWDD3S4R434 201 aa22.12■■□□□ 1.13
CCDC88C-205ENST00000553403 DPRXA6NFQ7 191 aa22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 EGR1P18146 543 aa22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 UBE2J1Q9Y385 318 aaPredicted RBP22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 SPENQ96T58 3664 aaKnown RBP22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 TRGV8A0A0C4DH27 118 aa22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 OOEPA6NGQ2 149 aa22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 HEXAP06865 529 aa22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 WNT2P09544 360 aa22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 PRDX2P32119 198 aa22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 LUMP51884 338 aaPredicted RBP22.11■■□□□ 1.13
CCDC88C-205ENST00000553403 LHFPL5Q8TAF8 219 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms