RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 OR10V1Q8NGI7 309 aa11.77□□□□□ -0.52
USP42-206ENST00000479544 DUSP13Q9UII6 198 aa11.77□□□□□ -0.52
USP42-206ENST00000479544 UBE2CO00762 179 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 CTXN2P0C2S0 81 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 FOLR3P41439 243 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 HYAL1Q12794 435 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 RTP5Q14D33 572 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 ACOT6Q3I5F7 207 aaPredicted RBP11.77□□□□□ -0.53
USP42-206ENST00000479544 WIPI1Q5MNZ9 446 aaPredicted RBP11.77□□□□□ -0.53
USP42-206ENST00000479544 OR5D13Q8NGL4 314 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 CLDN23Q96B33 292 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 GOLT1BQ9Y3E0 138 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 HDGFL3Q9Y3E1 203 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 CADP27708 2225 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 A0A1W2PQF6 199 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 SLC31A2O15432 143 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 SCTP09683 121 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 CMTM2Q8TAZ6 248 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 M1APQ8TC57 530 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 NAT8Q9UHE5 227 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 RNF24Q9Y225 148 aa11.77□□□□□ -0.53
USP42-206ENST00000479544 IGKV1D-8A0A087WSZ0 117 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 THBS3P49746 956 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 PNRC1Q12796 327 aaPredicted RBP11.76□□□□□ -0.53
USP42-206ENST00000479544 IL24Q13007 206 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 HES3Q5TGS1 186 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 BMPERQ8N8U9 685 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 TAAR9Q96RI9 348 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 DUSP15Q9H1R2 295 aaPredicted RBP11.76□□□□□ -0.53
USP42-206ENST00000479544 Q9N2K0 584 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 MYOTQ9UBF9 498 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 VAX2Q9UIW0 290 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 STARD10Q9Y365 291 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 ARL2-SNX15V9GYD0 113 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 IGHV3-43A0A0B4J1X8 118 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 IGHV3-43DP0DP04 118 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 BCL2P10415 239 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 PSG2P11465 335 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 TPPP2P59282 170 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 ZNF519Q8TB69 540 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 ZNF721Q8TF20 911 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 MVB12AQ96EY5 273 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 GRIFINA4D1Z8 144 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 CRYM-AS1A6NIL9 109 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 RNF212BA8MTL3 300 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 HIST1H2BKO60814 126 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 HIST1H2BJP06899 126 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 HIST1H2BOP23527 126 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 HIST1H2BBP33778 126 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 CEACAM6P40199 344 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 CLDN15P56746 228 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 HIST1H2BDP58876 126 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 HIST1H2BCP62807 126 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 CSRP2Q16527 193 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 HIST2H2BEQ16778 126 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.76□□□□□ -0.53
USP42-206ENST00000479544 ACSM6Q6P461 480 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 ZDHHC23Q8IYP9 409 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 HIST1H2BHQ93079 126 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 KCNK17Q96T54 332 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 HIST1H2BNQ99877 126 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 HIST1H2BMQ99879 126 aa11.76□□□□□ -0.53
USP42-206ENST00000479544 CXCL12P48061 93 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 RAB40CQ96S21 281 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 TP53RKQ96S44 253 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 MESP1Q9BRJ9 268 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 FSCN3Q9NQT6 498 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 ZNF331Q9NQX6 463 aaPredicted RBP11.75□□□□□ -0.53
USP42-206ENST00000479544 RPRMQ9NS64 109 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 PCOLCE2Q9UKZ9 415 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 VWA8A3KMH1 1905 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 F8VVB4 439 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 F8VWA3 439 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 CRISP2P16562 243 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 GPX4P36969 197 aaPredicted RBP11.75□□□□□ -0.53
USP42-206ENST00000479544 MDH2P40926 338 aaKnown RBP11.75□□□□□ -0.53
USP42-206ENST00000479544 ZNF124Q15973 351 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 LINC00114Q6XXX2 140 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 GABRG3Q99928 467 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 CHST5Q9GZS9 411 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 C11orf94C9JXX5 98 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 HSBP1O75506 76 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 ISG15P05161 165 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 FAM157CP0CG43 387 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 CCR5P51681 352 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 Q6ZN92 141 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 OR1P1Q8NH06 330 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 SGMS2Q8NHU3 365 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 HIPK2Q9H2X6 1198 aa11.75□□□□□ -0.53
USP42-206ENST00000479544 MYOZ1Q9NP98 299 aaPredicted RBP11.75□□□□□ -0.53
USP42-206ENST00000479544 MTCL1Q9Y4B5 1905 aaKnown RBP11.75□□□□□ -0.53
USP42-206ENST00000479544 TRDCB7Z8K6 153 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 CDS2O95674 445 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 CXCL1P09341 107 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 CA6P23280 308 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 ZNF658BQ4V348 819 aaPredicted RBP11.74□□□□□ -0.53
USP42-206ENST00000479544 TMEM164Q5U3C3 297 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 OR4C5Q8NGB2 326 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 OR6X1Q8NH79 312 aa11.74□□□□□ -0.53
USP42-206ENST00000479544 NEIL1Q96FI4 390 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms