RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 FN1P02751 2386 aaKnown RBP12.11□□□□□ -0.47
COL9A3-209ENST00000469852 IGHV3OR16-10A0A075B7F0 116 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 INAFM1C9JVW0 142 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 M0R1W7 72 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 SSX5O60225 188 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 CA11O75493 328 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 TOX4O94842 621 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 TAS2R20P59543 309 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 KLF17Q5JT82 389 aaPredicted RBP12.11□□□□□ -0.47
COL9A3-209ENST00000469852 METTL11BQ5VVY1 283 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 FAM53AQ6NSI3 398 aaPredicted RBP12.11□□□□□ -0.47
COL9A3-209ENST00000469852 ZNF782Q6ZMW2 699 aaPredicted RBP12.11□□□□□ -0.47
COL9A3-209ENST00000469852 MCFD2Q8NI22 146 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 RFESDQ8TAC1 157 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 NUDCD2Q8WVJ2 157 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 GCDHQ92947 438 aaPredicted RBP12.11□□□□□ -0.47
COL9A3-209ENST00000469852 TNFRSF14Q92956 283 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 S100A16Q96FQ6 103 aaKnown RBP12.11□□□□□ -0.47
COL9A3-209ENST00000469852 DMRTB1Q96MA1 342 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 CMTM3Q96MX0 182 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 CMSS1Q9BQ75 279 aaKnown RBP12.11□□□□□ -0.47
COL9A3-209ENST00000469852 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.11□□□□□ -0.47
COL9A3-209ENST00000469852 MBNL3Q9NUK0 354 aaKnown RBP12.11□□□□□ -0.47
COL9A3-209ENST00000469852 CALYQ9NYX4 217 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 OR6C3Q9NZP0 311 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 TRAPPC2LQ9UL33 140 aa12.11□□□□□ -0.47
COL9A3-209ENST00000469852 FAM25AB3EWG3 89 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 FAM25CB3EWG5 89 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 FAM25GB3EWG6 89 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 C12orf77C9JDV5 145 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 C15orf65H3BRN8 121 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 RGS5O15539 181 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 XRCC3O43542 346 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 SCGNO76038 276 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 FSHBP01225 129 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 IGHV4-38-2P0DP08 117 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 HACD4Q5VWC8 232 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 HCP5Q6MZN7 132 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 ZNF880Q6PDB4 577 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 PDZD9Q8IXQ8 264 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 MAFIPQ8WZ33 124 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 PHF21AQ96BD5 680 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 UPRTQ96BW1 309 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 AUNIPQ9H7T9 357 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 CHMP1AQ9HD42 196 aaPredicted RBP12.1□□□□□ -0.47
COL9A3-209ENST00000469852 C12orf4Q9NQ89 552 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 DIABLOQ9NR28 239 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 TAS2R3Q9NYW6 316 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 ZNF230Q9UIE0 474 aaPredicted RBP12.1□□□□□ -0.47
COL9A3-209ENST00000469852 MXRA5Q9NR99 2828 aa12.1□□□□□ -0.47
COL9A3-209ENST00000469852 TRBV6-6A0A0A6YYG2 114 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 A0A0A6YYH2 397 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 TRAV40A0A0B4J280 105 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 KBTBD11-OT1A0A1B0GTJ5 212 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 FAM172BPA6NC97 362 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 A6NJ64 397 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 ZNF729A6NN14 1252 aaPredicted RBP12.09□□□□□ -0.47
COL9A3-209ENST00000469852 SERPINE3A8MV23 424 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 RNASEK-C17orf49H0YIS7 233 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 CLPXO76031 633 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 HLA-DQB1P01920 261 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 FCGR3AP08637 254 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 GSTP1P09211 210 aaKnown RBP12.09□□□□□ -0.47
COL9A3-209ENST00000469852 CD3GP09693 182 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 IGHV1-8P0DP01 117 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 GUCA2AQ02747 115 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 LTC4SQ16873 150 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 TMEM69Q5SWH9 247 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 CNIH2Q6PI25 160 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 C1orf122Q6ZSJ8 110 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 PNKDQ8N490 385 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 OR1L1Q8NH94 360 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 SETD6Q8TBK2 473 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 LHX4Q969G2 390 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 GAL3ST2Q9H3Q3 398 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 METTL8Q9H825 291 aaKnown RBP12.09□□□□□ -0.47
COL9A3-209ENST00000469852 Q9N2K0 584 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 TMEM160Q9NX00 188 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 EXTL2Q9UBQ6 330 aa12.09□□□□□ -0.47
COL9A3-209ENST00000469852 SOX21Q9Y651 276 aaPredicted RBP12.09□□□□□ -0.47
COL9A3-209ENST00000469852 IGKV1D-8A0A087WSZ0 117 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 CENPVL3A0A0U1RRI6 287 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 A0A1W2PPH5 198 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 NPIPB11E5RHQ5 1161 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 MELTFP08582 738 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 PRTN3P24158 256 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 ARFRP1Q13795 201 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 HMGN3Q15651 99 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 CNPY1Q3B7I2 92 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 HEPN1Q6WQI6 88 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 PRR18Q8N4B5 295 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 ZNF565Q8N9K5 539 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 ARL11Q969Q4 196 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 KIRREL1Q96J84 757 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 LINC00574Q9H8X3 128 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 UNKLQ9H9P5 680 aaKnown RBP12.08□□□□□ -0.48
COL9A3-209ENST00000469852 TAF9BQ9HBM6 251 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 BATF3Q9NR55 127 aa12.08□□□□□ -0.48
COL9A3-209ENST00000469852 CUBNO60494 3623 aa12.07□□□□□ -0.48
COL9A3-209ENST00000469852 IGHV3-43A0A0B4J1X8 118 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms