RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 DUX4L9Q6RFH8 374 aaPredicted RBP8.36□□□□□ -1.07
CD44-207ENST00000425428 ZNF841Q6ZN19 808 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 HOGA1Q86XE5 327 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 OR10A7Q8NGE5 316 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 OR4A4PQ8NGN8 299 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 OR52I2Q8NH67 350 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 OR10J5Q8NHC4 309 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 C8orf46Q8TAG6 207 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 GPX8Q8TED1 209 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 IL1F10Q8WWZ1 152 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 DYRK2Q92630 601 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 CORO2AQ92828 525 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 COQ2Q96H96 371 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 COX4I2Q96KJ9 171 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 ABHD1Q96SE0 405 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 TAF9BQ9HBM6 251 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 LPAR2Q9HBW0 351 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 Q9N2K0 584 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 NECAP2Q9NVZ3 263 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 DUX4Q9UBX2 424 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 MTFP1Q9UDX5 166 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 ZNF107Q9UII5 783 aaPredicted RBP8.36□□□□□ -1.07
CD44-207ENST00000425428 KCNK7Q9Y2U2 307 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 PRRC2AP48634 2157 aaKnown RBP8.36□□□□□ -1.07
CD44-207ENST00000425428 KBTBD11-OT1A0A1B0GTJ5 212 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 MEIS3P1A6NDR6 274 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 M0R1W7 72 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 SMAD7O15105 426 aaKnown RBP8.35□□□□□ -1.07
CD44-207ENST00000425428 FABP7O15540 132 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 TGFAP01135 160 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 ZBTB25P24278 435 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 DEFA1P59665 94 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 DEFA3P59666 94 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 ERVFRD-1P60508 538 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 TSPAN5P62079 268 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 MEF2DQ14814 521 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 STEAP3Q658P3 488 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 OLFML2AQ68BL7 652 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 TMEM200BQ69YZ2 307 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 BIVMQ86UB2 503 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 KIR3DL3Q8N743 410 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 WFDC11Q8NEX6 87 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 DEDD2Q8WXF8 326 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 HEXA-AS1Q9H8Q6 139 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 AKIP1Q9NQ31 210 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 C19orf12Q9NSK7 152 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 CALYQ9NYX4 217 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 ZNF581Q9P0T4 197 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 GNG12Q9UBI6 72 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 ANXA10Q9UJ72 324 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 RBM7Q9Y580 266 aaKnown RBP8.35□□□□□ -1.07
CD44-207ENST00000425428 KPTNQ9Y664 436 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 V9GYH0 126 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 ITPR2Q14571 2701 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 CCDC168Q8NDH2 2452 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 IGHV2-70DA0A0C4DH43 119 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 DISC1C4P0D8 188 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 SDCBPO00560 298 aaPredicted RBP8.35□□□□□ -1.07
CD44-207ENST00000425428 DIRAS3O95661 229 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 RBP4P02753 201 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 PTHLHP12272 177 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 NFYBP25208 207 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 GDNFP39905 211 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 DVL1P1P54792 670 aaPredicted RBP8.35□□□□□ -1.07
CD44-207ENST00000425428 DGCR2P98153 550 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 GUCA2AQ02747 115 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 TMEM249Q2WGJ8 235 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 RNASE10Q5GAN6 216 aaKnown RBP8.35□□□□□ -1.07
CD44-207ENST00000425428 NCR3LG1Q68D85 454 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 Q6ZS49 121 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 C1orf122Q6ZSJ8 110 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 GAPTQ8N292 157 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 OR5AP2Q8NGF4 316 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 BORCS5Q969J3 196 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 TMEM186Q96B77 213 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 SOSTQ9BQB4 213 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 HDHD3Q9BSH5 251 aaPredicted RBP8.35□□□□□ -1.07
CD44-207ENST00000425428 SRRQ9GZT4 340 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 METTL8Q9H825 291 aaKnown RBP8.35□□□□□ -1.07
CD44-207ENST00000425428 OR2S2Q9NQN1 319 aa8.35□□□□□ -1.07
CD44-207ENST00000425428 MBNL3Q9NUK0 354 aaKnown RBP8.35□□□□□ -1.07
CD44-207ENST00000425428 ZNF230Q9UIE0 474 aaPredicted RBP8.35□□□□□ -1.07
CD44-207ENST00000425428 POLR3KQ9Y2Y1 108 aaPredicted RBP8.35□□□□□ -1.07
CD44-207ENST00000425428 NBPF19A0A087WUL8 3843 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 MEIOCA2RUB1 952 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 J3QLI3 93 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 TOR1AO14656 332 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 BET1O15155 118 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 TOX4O94842 621 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 HBZP02008 142 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 AKAIN1P0CW23 69 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 RCC1P18754 421 aaPredicted RBP8.34□□□□□ -1.07
CD44-207ENST00000425428 FPR2P25090 351 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 PRRX1P54821 245 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 CR1LQ2VPA4 569 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 FAHD2BQ6P2I3 314 aaPredicted RBP8.34□□□□□ -1.07
CD44-207ENST00000425428 ZNF880Q6PDB4 577 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 TMEM229BQ8NBD8 167 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 OR13A1Q8NGR1 328 aa8.34□□□□□ -1.07
CD44-207ENST00000425428 OR13D1Q8NGV5 346 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms