RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 NPTNQ9Y639 398 aa13.89□□□□□ -0.19
USP42-201ENST00000306177 NKX2-6A6NCS4 301 aa13.89□□□□□ -0.19
USP42-201ENST00000306177 FAM157AC9JC47 383 aa13.89□□□□□ -0.19
USP42-201ENST00000306177 FTH1P19P0C7X4 201 aa13.89□□□□□ -0.19
USP42-201ENST00000306177 UBE2L3P68036 154 aaKnown RBP13.89□□□□□ -0.19
USP42-201ENST00000306177 FHL5Q5TD97 284 aa13.89□□□□□ -0.19
USP42-201ENST00000306177 KLHDC1Q8N7A1 406 aa13.89□□□□□ -0.19
USP42-201ENST00000306177 ALX4Q9H161 411 aaPredicted RBP13.89□□□□□ -0.19
USP42-201ENST00000306177 GOLT1BQ9Y3E0 138 aa13.89□□□□□ -0.19
USP42-201ENST00000306177 A0A1W2PR77 199 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 A0A1W2PRD5 423 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 A0A1W2PRF3 423 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 A0A1W2PRM7 423 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 GATCO43716 136 aaKnown RBP13.88□□□□□ -0.19
USP42-201ENST00000306177 UCNP55089 124 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 CEACAM21Q3KPI0 293 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 ZNF260Q3ZCT1 412 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 FAM214BQ7L5A3 538 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 ZNF441Q8N8Z8 693 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 PRR7Q8TB68 274 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 TOLLIPQ9H0E2 274 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 VSIG4Q9Y279 399 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 IGF2P01344 180 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 GYPAP02724 150 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 NAT1P18440 290 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 EWSR1Q01844 656 aaKnown RBP eCLIP13.88□□□□□ -0.19
USP42-201ENST00000306177 RTP5Q14D33 572 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 DHRS7BQ6IAN0 325 aaPredicted RBP13.88□□□□□ -0.19
USP42-201ENST00000306177 CTHRC1Q96CG8 243 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 HEXA-AS1Q9H8Q6 139 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 PTPRFP10586 1907 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 TRAV39A0A0B4J263 110 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 A0A1W2PNV4 684 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 AESQ08117 197 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 PNRC1Q12796 327 aaPredicted RBP13.88□□□□□ -0.19
USP42-201ENST00000306177 SLC25A47Q6Q0C1 308 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 SPNS3Q6ZMD2 512 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 HDHD3Q9BSH5 251 aaPredicted RBP13.88□□□□□ -0.19
USP42-201ENST00000306177 KCNE5Q9UJ90 142 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 GOLGB1Q14789 3259 aaKnown RBP13.88□□□□□ -0.19
USP42-201ENST00000306177 IGLV1-36A0A0B4J1U3 117 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 DUXBA0A1W2PPF3 345 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 FAM24BQ8N5W8 94 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 OR1B1Q8NGR6 318 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 PGLYRP3Q96LB9 341 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 Q9N2K0 584 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 C1RLQ9NZP8 487 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 HS3ST3B1Q9Y662 390 aa13.88□□□□□ -0.19
USP42-201ENST00000306177 LTBP1Q14766 1721 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 LGALS7P47929 136 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 FLYWCH2Q96CP2 140 aaKnown RBP13.87□□□□□ -0.19
USP42-201ENST00000306177 LIPGQ9Y5X9 500 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 LOC102723971A0A1B0GUV8 181 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 FCGR3AP08637 254 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 HOXD4P09016 255 aaPredicted RBP13.87□□□□□ -0.19
USP42-201ENST00000306177 P2RY6Q15077 328 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 RPEL1Q2QD12 228 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 FAM219AQ8IW50 185 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 NFAM1Q8NET5 270 aaPredicted RBP13.87□□□□□ -0.19
USP42-201ENST00000306177 FAM210BQ96KR6 192 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 PRDM6Q9NQX0 595 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 NAT8Q9UHE5 227 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 CACNA1IQ9P0X4 2223 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 IGHV3OR15-7A0A075B7D8 119 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 A0A1W2PQM1 296 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 SYNGR1O43759 233 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 PMCHP20382 165 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 G6PCP35575 357 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 RANP62826 216 aaKnown RBP13.87□□□□□ -0.19
USP42-201ENST00000306177 TEX30Q5JUR7 227 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 PDPNQ86YL7 162 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 FGF11Q92914 225 aa13.87□□□□□ -0.19
USP42-201ENST00000306177 TMEM50BP56557 158 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 LGALSLQ3ZCW2 172 aaPredicted RBP13.86□□□□□ -0.19
USP42-201ENST00000306177 SSX7Q7RTT5 188 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 UBTD1Q9HAC8 227 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 WIPI2Q9Y4P8 454 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 ASXL3Q9C0F0 2248 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 TDRD6O60522 2096 aaKnown RBP13.86□□□□□ -0.19
USP42-201ENST00000306177 F2RL2O00254 374 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 OR2J3O76001 311 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 PSG2P11465 335 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 HARBI1Q96MB7 349 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 ZNF488Q96MN9 340 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 AMELYQ99218 206 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 TMEM74BQ9NUR3 256 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 INSIG2Q9Y5U4 225 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 C7orf66A4D0T2 115 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 ISG15P05161 165 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 UCP2P55851 309 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 IGLV3-21P80748 117 aaPredicted RBP13.86□□□□□ -0.19
USP42-201ENST00000306177 VAX1Q5SQQ9 334 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 NUDT16L1Q9BRJ7 211 aaKnown RBP13.86□□□□□ -0.19
USP42-201ENST00000306177 COL10A1Q03692 680 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 KRTCAP3Q53RY4 240 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 OR10A7Q8NGE5 316 aa13.86□□□□□ -0.19
USP42-201ENST00000306177 GVINP1Q7Z2Y8 2422 aa13.85□□□□□ -0.19
USP42-201ENST00000306177 SPINK4O60575 86 aa13.85□□□□□ -0.19
USP42-201ENST00000306177 CEBPEQ15744 281 aa13.85□□□□□ -0.19
USP42-201ENST00000306177 BVESQ8NE79 360 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms