RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CFAP46Q8IYW2 2715 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 A0A1B0GW15 77 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TCRBV16S1A1N1A0A5B0 115 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 LEFTY1O75610 366 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 PGA4P0DJD7 388 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 PGA3P0DJD8 388 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 PGA5P0DJD9 388 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 GZMHP20718 246 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 BCL3P20749 454 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 JAM2P57087 298 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SPATA45Q537H7 98 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 NRG4Q8WWG1 115 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 HSD3B7Q9H2F3 369 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ARID2Q68CP9 1835 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 LRP5O75197 1615 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 APCSP02743 223 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 OSMP13725 252 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SPNP16150 400 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 GGTLC2Q14390 218 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM78Q5T7P6 136 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TBC1D26Q86UD7 250 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF511Q8NB15 262 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 F2RL3Q96RI0 385 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SELENOIQ9C0D9 397 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 RNF11Q9Y3C5 154 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 OR51B4Q9Y5P0 310 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SCN7AQ01118 1682 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF98A6NK75 572 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 GPANK1O95872 356 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 CD96P40200 585 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SNRPNP63162 240 aaKnown RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 IRF3Q14653 427 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 OR5AS1Q8N127 324 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 LINC00469Q8N7U9 141 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SLC35B4Q969S0 331 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 FAM71F1Q96KD3 344 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 MRGPRX4Q96LA9 322 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 GABARAPL3Q9BY60 117 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 MSL2Q9HCI7 577 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 FOXJ2Q9P0K8 574 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TAAR3PQ9P1P4 343 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF541Q9H0D2 1346 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 A8MT66 165 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 J3QKU1 62 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 HSD17B6O14756 317 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 NAPSAO96009 420 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 LIMS3P0CW19 117 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 LIMS4P0CW20 117 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 HOXB1P14653 301 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 RAB38P57729 211 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 CXCR4P61073 352 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF85Q03923 595 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 DUSP5Q16690 384 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SIRPB2Q5JXA9 342 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 FCRLBQ6BAA4 426 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 NFAM1Q8NET5 270 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 OR5A1Q8NGJ0 315 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ELF5Q9UKW6 265 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 IER3IP1Q9Y5U9 82 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 HCFC2Q9Y5Z7 792 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 B4GALT5O43286 388 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 FCGR3AP08637 254 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 GZMBP10144 247 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 PCBP3P57721 371 aaKnown RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ERVS71-1P61550 626 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 ID2Q02363 134 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 FCRLAQ7L513 359 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 PRSS35Q8N3Z0 413 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 C2CD4AQ8NCU7 369 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 OR8G5Q8NG78 346 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 OR2T10Q8NGZ9 312 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 OR2V1Q8NHB1 315 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 INPP5KQ9BT40 448 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 G6PC2Q9NQR9 355 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 FLRT3Q9NZU0 649 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 CLDN16Q9Y5I7 305 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TRPM3Q9HCF6 1732 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 KIF26AQ9ULI4 1882 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 A0A1B0GWB2 263 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 IFITM10A6NMD0 228 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 C9JCJ5 164 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 CTSVO60911 334 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 DUTP33316 252 aaKnown RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 POU3F1Q03052 451 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 PCLAFQ15004 111 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 KHDC3LQ587J8 217 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SAPCD1Q5SSQ6 148 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 C10orf128Q5T292 105 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 DMRTA1Q5VZB9 504 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 CST9Q5W186 159 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 LILRA2Q8N149 483 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 C15orf53Q8NAA6 179 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 SPANXB1Q9NS25 103 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-219ENST00000641575 NDUFB11Q9NX14 153 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 RASL12Q9NYN1 266 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 MAST2Q6P0Q8 1798 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 TRAV39A0A0B4J263 110 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 MAP1LC3B2A6NCE7 125 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 MBTPS2O43462 519 aa2.48□□□□□ -2.01
SCN1A-219ENST00000641575 CLDN14O95500 239 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms