RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SFT2D1Q8WV19 159 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 TMEM171Q8WVE6 324 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 OR5P3Q8WZ94 311 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 CD300LBA8K4G0 201 aa10.91□□□□□ -0.66
LINC00540-203ENST00000631321 NGFP01138 241 aa10.91□□□□□ -0.66
LINC00540-203ENST00000631321 WNT2P09544 360 aa10.91□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF44P15621 663 aa10.91□□□□□ -0.66
LINC00540-203ENST00000631321 PPP1CCP36873 323 aaKnown RBP10.91□□□□□ -0.66
LINC00540-203ENST00000631321 ZXDAP98168 799 aa10.91□□□□□ -0.66
LINC00540-203ENST00000631321 RNPS1Q15287 305 aaKnown RBP10.91□□□□□ -0.66
LINC00540-203ENST00000631321 ABHD17BQ5VST6 288 aa10.91□□□□□ -0.66
LINC00540-203ENST00000631321 TMEM105Q8N8V8 129 aa10.91□□□□□ -0.66
LINC00540-203ENST00000631321 SUMF1Q8NBK3 374 aa10.91□□□□□ -0.66
LINC00540-203ENST00000631321 APH1AQ96BI3 265 aa10.91□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF552Q9H707 407 aaPredicted RBP10.91□□□□□ -0.66
LINC00540-203ENST00000631321 GLRX2Q9NS18 164 aa10.91□□□□□ -0.66
LINC00540-203ENST00000631321 C9orf172C9J069 976 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 SYNGR1O43759 233 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 SSSCA1O60232 199 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 TMEM50AO95807 157 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 AKR1C3P42330 323 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 ASCL1P50553 236 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 RAB1AP62820 205 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 CLINT1Q14677 625 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 CDCP2Q5VXM1 449 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 CMTM1Q8IZ96 169 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 ZFP82Q8N141 532 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 SUMF2Q8NBJ7 301 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 OR2G3Q8NGZ4 309 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 C2CD4CQ8TF44 421 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 HIST1H2AAQ96QV6 131 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 HES7Q9BYE0 225 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 TTTY12Q9BZ98 90 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 HIPK2Q9H2X6 1198 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 IFT22Q9H7X7 185 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 KCNJ16Q9NPI9 418 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 CCL28Q9NRJ3 127 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 BTBD17A6NE02 478 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 C1orf196B1AJZ1 125 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 HSPA12AO43301 675 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 PGLYRP1O75594 196 aaPredicted RBP10.9□□□□□ -0.66
LINC00540-203ENST00000631321 SNRNP70P08621 437 aaKnown RBP10.9□□□□□ -0.66
LINC00540-203ENST00000631321 AGAP20933 346 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 VAMP2P63027 116 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 OR1C1Q15619 314 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 SPSB3Q6PJ21 355 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 OR1J1Q8NGS3 322 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 IP6K3Q96PC2 410 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 C12orf57Q99622 126 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 CABLES2Q9BTV7 478 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 SMOC1Q9H4F8 434 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 FBXO7Q9Y3I1 522 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 RNF115Q9Y4L5 304 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 MPC1Q9Y5U8 109 aa10.9□□□□□ -0.66
LINC00540-203ENST00000631321 PIGBOS1A0A0B4J2F0 54 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 OR5B21A6NL26 309 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 HSD17B6O14756 317 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 ZNHIT1O43257 154 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 SLC34A2O95436 690 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 SLC25A6P12236 298 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 CEACAM1P13688 526 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 MAGEA5P43359 124 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 IL24Q13007 206 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 AKIRIN2Q53H80 203 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 ZNF324BQ6AW86 544 aaPredicted RBP10.89□□□□□ -0.67
LINC00540-203ENST00000631321 ZNF573Q86YE8 665 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 TMEM251Q8N6I4 163 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 NEK7Q8TDX7 302 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 GNPNAT1Q96EK6 184 aaPredicted RBP10.89□□□□□ -0.67
LINC00540-203ENST00000631321 GPR87Q9BY21 358 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 MAGT1Q9H0U3 335 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 ABI3Q9P2A4 366 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 TRAV24A0A0B4J272 114 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 FAM166BA8MTA8 275 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 C21orf140B9A014 251 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 M0R036 132 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 F2RP25116 425 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 PLP2Q04941 152 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 OR8G1Q15617 311 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 C20orf204Q6ZNR8 217 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 H1FOOQ8IZA3 346 aaPredicted RBP10.89□□□□□ -0.67
LINC00540-203ENST00000631321 ZNF561Q8N587 486 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 IL22RA1Q8N6P7 574 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 OR5C1Q8NGR4 320 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 PKIBQ9C010 78 aa10.89□□□□□ -0.67
LINC00540-203ENST00000631321 TNRC18O15417 2968 aaPredicted RBP10.89□□□□□ -0.67
LINC00540-203ENST00000631321 NPIPB11E5RHQ5 1161 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 HSPB6O14558 160 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 JMJD7P0C870 316 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 MAS1LP35410 378 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 WNT5AP41221 380 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 MEOX2P50222 304 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 DYNLT3P51808 116 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 PAX9P55771 341 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 GNG3P63215 75 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 MALSU1Q96EH3 234 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 GPHA2Q96T91 129 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 FOXJ2Q9P0K8 574 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 TAAR3PQ9P1P4 343 aa10.88□□□□□ -0.67
LINC00540-203ENST00000631321 OR2W1Q9Y3N9 320 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms